Pan Du
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/methyAnalysis |
| Branch: RELEASE_3_9 |
| Last Commit: 8cd0711 |
| Last Changed Date: 2019-05-02 11:53:38 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:26:51 -0400 (Wed, 16 Oct 2019).
| Package 977/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methyAnalysis 1.26.0 Pan Du
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: methyAnalysis |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/methyAnalysis_1.26.0.tar.gz && rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL methyAnalysis_1.26.0.zip && rm methyAnalysis_1.26.0.tar.gz methyAnalysis_1.26.0.zip |
| StartedAt: 2019-10-15 21:11:37 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 21:13:21 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 103.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/methyAnalysis_1.26.0.tar.gz && rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL methyAnalysis_1.26.0.zip && rm methyAnalysis_1.26.0.tar.gz methyAnalysis_1.26.0.zip
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install for i386
* installing *source* package 'methyAnalysis' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** help
*** installing help indices
converting help for package 'methyAnalysis'
finding HTML links ... done
MethyGenoSet-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:34: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:36: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:46: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:51: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:57: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:58: file link 'colData' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:86: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:91: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
MethyLumiM2GenoSet html
annotateDMRInfo html
annotateGRanges html
asBigMatrix-methods html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpof7WmX/R.INSTALL2902e761c24/methyAnalysis/man/asBigMatrix-methods.Rd:15: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
buildAnnotationTracks html
checkChrName html
createTranscriptTrack html
detectDMR.slideWin html
estimateCMR.methylation html
estimateMethySeq html
exampleMethyGenoSet html
export.DMRInfo html
export.methyGenoSet html
filterBisulfiteVariant html
getContinuousRegion html
getCoverage html
heatmapByChromosome html
identifyCpG html
identifySigDMR html
plotHeatmapByGene html
plotMethylationHeatmapByGene html
plotTracksWithDataTrackInfo html
smoothMethyData html
updateMethyGenoSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** testing if installed package can be loaded from final location
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methyAnalysis' ...
** testing if installed package can be loaded
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
* MD5 sums
packaged installation of 'methyAnalysis' as methyAnalysis_1.26.0.zip
* DONE (methyAnalysis)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'methyAnalysis' successfully unpacked and MD5 sums checked