Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 11:55:18 -0400 (Wed, 16 Oct 2019).
Package 811/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
impute 1.58.0 Balasubramanian Narasimhan
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: impute |
Version: 1.58.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:impute.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings impute_1.58.0.tar.gz |
StartedAt: 2019-10-16 02:31:15 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 02:31:34 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 18.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: impute.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:impute.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings impute_1.58.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/impute.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘impute/DESCRIPTION’ ... OK * this is package ‘impute’ version ‘1.58.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘impute’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/impute.Rcheck/00check.log’ for details.
impute.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL impute ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘impute’ ... ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c knnimpute.f -o knnimpute.o f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 91 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 94 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 97 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 99 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 102 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 103 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 104 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 106 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 107 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 108 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 109 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 111 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 112 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 113 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 114 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 115 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 116 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 118 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 119 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 120 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 121 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 122 [-Wtabs] knnimpute.f:168:0: ratio=dabs(dnew-dold)/dold Warning: ‘dold’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o impute.so knnimpute.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-impute/00new/impute/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (impute)
impute.Rcheck/impute-Ex.timings
name | user | system | elapsed | |
impute.knn | 0.658 | 0.028 | 0.687 | |
khanmiss | 0.239 | 0.004 | 0.243 | |