Christopher Bare
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/gaggle |
| Branch: RELEASE_3_9 |
| Last Commit: 71123ad |
| Last Changed Date: 2019-05-02 11:53:06 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:20:39 -0400 (Wed, 16 Oct 2019).
| Package 601/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gaggle 1.52.0 Christopher Bare
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: gaggle |
| Version: 1.52.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gaggle_1.52.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gaggle_1.52.0.zip && rm gaggle_1.52.0.tar.gz gaggle_1.52.0.zip |
| StartedAt: 2019-10-15 18:56:00 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:57:31 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 90.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gaggle_1.52.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gaggle_1.52.0.zip && rm gaggle_1.52.0.tar.gz gaggle_1.52.0.zip
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install for i386
* installing *source* package 'gaggle' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gaggle'
finding HTML links ... done
broadcast html
connectToGaggle html
disconnectFromGaggle html
gaggleInit html
geese html
getCluster html
getJavaClassName html
getMatrix html
getNameList html
getNetwork html
getSpecies html
getTargetGoose html
getTuple html
hideGoose html
newTuple html
setSpecies html
setTargetGoose html
showGoose html
testGagglePackage html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
onLoad -- libname: C:/Users/biocbuild/bbs-3.9-bioc/meat/gaggle.buildbin-libdir/00LOCK-gaggle/00new pkgname: gaggle
path to jar: C:/Users/biocbuild/bbs-3.9-bioc/meat/gaggle.buildbin-libdir/00LOCK-gaggle/00new/gaggle/jars/gaggleRShell.jar
script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $
os version: Windows Server 2012 R2
jvm version: 1.8.0_111
You are using the wrong version of Java.
Please see http://gaggle.systemsbiology.org/docs/html/java
** testing if installed package can be loaded from final location
onLoad -- libname: C:/Users/biocbuild/bbs-3.9-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle
path to jar: C:/Users/biocbuild/bbs-3.9-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar
script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $
os version: Windows Server 2012 R2
jvm version: 1.8.0_111
You are using the wrong version of Java.
Please see http://gaggle.systemsbiology.org/docs/html/java
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gaggle' ...
** testing if installed package can be loaded
onLoad -- libname: C:/Users/biocbuild/bbs-3.9-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle
path to jar: C:/Users/biocbuild/bbs-3.9-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar
script: gaggle.R $Revision: 4499 $ $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $
os version: Windows Server 2012 R2
jvm version: 1.8.0_111
You are using the wrong version of Java.
Please see http://gaggle.systemsbiology.org/docs/html/java
* MD5 sums
packaged installation of 'gaggle' as gaggle_1.52.0.zip
* DONE (gaggle)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'gaggle' successfully unpacked and MD5 sums checked