VJ Carey
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/gQTLstats |
| Branch: RELEASE_3_9 |
| Last Commit: c68a9cf |
| Last Changed Date: 2019-05-02 11:53:51 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:06 -0400 (Wed, 16 Oct 2019).
| Package 710/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gQTLstats 1.16.0 VJ Carey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: gQTLstats |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gQTLstats_1.16.0.tar.gz && rm -rf gQTLstats.buildbin-libdir && mkdir gQTLstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gQTLstats.buildbin-libdir gQTLstats_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gQTLstats_1.16.0.zip && rm gQTLstats_1.16.0.tar.gz gQTLstats_1.16.0.zip |
| StartedAt: 2019-10-15 20:54:37 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:57:49 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 192.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gQTLstats_1.16.0.tar.gz && rm -rf gQTLstats.buildbin-libdir && mkdir gQTLstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gQTLstats.buildbin-libdir gQTLstats_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gQTLstats_1.16.0.zip && rm gQTLstats_1.16.0.tar.gz gQTLstats_1.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 62.6M 1 1040k 0 0 1416k 0 0:00:45 --:--:-- 0:00:45 1428k
100 62.6M 100 62.6M 0 0 39.7M 0 0:00:01 0:00:01 --:--:-- 39.9M
install for i386
* installing *source* package 'gQTLstats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gQTLstats'
finding HTML links ... done
FDRsupp-class html
TransStore-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/TransStore-class.Rd:19: file link 'Registry' in package 'BatchJobs' does not exist and so has been treated as a topic
TransStore html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/TransStore.Rd:18: file link 'Registry' in package 'BatchJobs' does not exist and so has been treated as a topic
cisAssoc html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/cisAssoc.Rd:37: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/cisAssoc.Rd:40: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/cisAssoc.Rd:63: file link 'col.summary' in package 'snpStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/cisAssoc.Rd:75: file link 'isSNV' in package 'VariantAnnotation' does not exist and so has been treated as a topic
clipPCs html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/clipPCs.Rd:24: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/clipPCs.Rd:50: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
directPlot html
enumerateByFDR html
finding level-2 HTML links ... done
eqBox2 html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/eqBox2.Rd:27: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
filtFDR html
gQTLs html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/gQTLs.Rd:29: file link 'readVcf' in package 'VariantAnnotation' does not exist and so has been treated as a topic
gQTLstats-package html
hmm878 html
manhWngr html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/manhWngr.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
mixedVCFtoSnpMatrix html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:18: file link 'CollapsedVCF-class' in package 'VariantAnnotation' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:24: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:32: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:50: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
pifdr html
qqStore html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/qqStore.Rd:28: file link 'storeToQuantiles' in package 'gQTLstats' does not exist and so has been treated as a topic
queryVCF html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/queryVCF.Rd:29: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
senstab html
setFDRfunc html
storeToStats html
tqbrowser html
transAssoc html
transBrowse html
tsByRank html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp426Uxf/R.INSTALL24943922e62/gQTLstats/man/tsByRank.Rd:52: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
txsPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gQTLstats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gQTLstats' as gQTLstats_1.16.0.zip
* DONE (gQTLstats)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'gQTLstats' successfully unpacked and MD5 sums checked