Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:24:11 -0400 (Wed, 16 Oct 2019).
Package 536/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
farms 1.36.0 Djork-Arne Clevert
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: farms |
Version: 1.36.0 |
Command: rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.36.0.tar.gz |
StartedAt: 2019-10-16 09:11:08 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 09:11:37 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 29.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: farms_1.36.0.zip |
PackageFileSize: 290.6 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.36.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'farms' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'farms' finding HTML links ... done INI_Calls-class html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/INI_Calls-class.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic INIcalls-methods html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/INIcalls-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/INIcalls-methods.rd:22: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/INIcalls-methods.rd:14: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic dummy html expFarms html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/expFarms.rd:5: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/expFarms.rd:35: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic generateExprVal.method.farms html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/generateExprVal.method.farms.rd:39: file link 'li.wong' in package 'affy' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/generateExprVal.method.farms.rd:39: file link 'medianpolish' in package 'affy' does not exist and so has been treated as a topic getI_Eset-methods html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/getI_Eset-methods.rd:8: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/getI_Eset-methods.rd:18: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic getI_ProbeSets-methods html getNI_Eset-methods html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/getNI_Eset-methods.rd:10: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/getNI_Eset-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic getNI_ProbeSets-methods html lFarms html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/lFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/lFarms.rd:32: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic plot-methods html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/plot-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic qFarms html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/qFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/qFarms.rd:33: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic summary-methods html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpcxyzlM/R.INSTALL2b5c2c641b83/farms/man/summary-methods.rd:19: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic testAffyBatch html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'farms' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'farms' as farms_1.36.0.zip * DONE (farms)