Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:35:53 -0400 (Wed, 16 Oct 2019).
Package 515/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
epivizrStandalone 1.12.0 Hector Corrada Bravo
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: epivizrStandalone |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/epivizrStandalone_1.12.0.tar.gz && rm -rf epivizrStandalone.buildbin-libdir && mkdir epivizrStandalone.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrStandalone.buildbin-libdir epivizrStandalone_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL epivizrStandalone_1.12.0.zip && rm epivizrStandalone_1.12.0.tar.gz epivizrStandalone_1.12.0.zip |
StartedAt: 2019-10-15 20:47:31 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 20:48:28 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 57.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/epivizrStandalone_1.12.0.tar.gz && rm -rf epivizrStandalone.buildbin-libdir && mkdir epivizrStandalone.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrStandalone.buildbin-libdir epivizrStandalone_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL epivizrStandalone_1.12.0.zip && rm epivizrStandalone_1.12.0.tar.gz epivizrStandalone_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6722 100 6722 0 0 108k 0 --:--:-- --:--:-- --:--:-- 123k install for i386 * installing *source* package 'epivizrStandalone' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' ** help *** installing help indices converting help for package 'epivizrStandalone' finding HTML links ... done setStandalone html startStandalone html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCaGHHk/R.INSTALL25e476ab2b98/epivizrStandalone/man/startStandalone.Rd:13: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCaGHHk/R.INSTALL25e476ab2b98/epivizrStandalone/man/startStandalone.Rd:37: file link 'EpivizApp' in package 'epivizr' does not exist and so has been treated as a topic startStandaloneApp html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCaGHHk/R.INSTALL25e476ab2b98/epivizrStandalone/man/startStandaloneApp.Rd:14: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCaGHHk/R.INSTALL25e476ab2b98/epivizrStandalone/man/startStandaloneApp.Rd:35: file link 'EpivizApp' in package 'epivizr' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' ** testing if installed package can be loaded from final location Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'epivizrStandalone' ... ** testing if installed package can be loaded Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone' Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone' * MD5 sums packaged installation of 'epivizrStandalone' as epivizrStandalone_1.12.0.zip * DONE (epivizrStandalone) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'epivizrStandalone' successfully unpacked and MD5 sums checked