Sarah Williams
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/celaref |
| Branch: RELEASE_3_9 |
| Last Commit: c5ddafe |
| Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:42:04 -0400 (Wed, 16 Oct 2019).
| Package 223/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| celaref 1.2.0 Sarah Williams
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: celaref |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/celaref_1.2.0.tar.gz && rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celaref.buildbin-libdir celaref_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL celaref_1.2.0.zip && rm celaref_1.2.0.tar.gz celaref_1.2.0.zip |
| StartedAt: 2019-10-15 20:41:47 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:43:02 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 75.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/celaref_1.2.0.tar.gz && rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celaref.buildbin-libdir celaref_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL celaref_1.2.0.zip && rm celaref_1.2.0.tar.gz celaref_1.2.0.zip
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install for i386
* installing *source* package 'celaref' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'celaref'
finding HTML links ... done
contrast_each_group_to_the_rest html
contrast_each_group_to_the_rest_for_norm_ma_with_limma
html
contrast_the_group_to_the_rest html
contrast_the_group_to_the_rest_with_limma_for_microarray
html
convert_se_gene_ids html
de_table.demo_query html
de_table.demo_ref html
demo_cell_info_table html
demo_counts_matrix html
demo_gene_info_table html
demo_microarray_expr html
demo_microarray_sample_sheet html
demo_query_se html
demo_ref_se html
find_within_match_differences html
get_counts_index html
get_inner_or_outer_ci html
get_limma_top_table_with_ci html
get_matched_stepped_mwtest_res_table html
get_ranking_and_test_results html
get_rankstat_table html
get_reciprocal_matches html
get_stepped_pvals_str html
get_the_up_genes_for_all_possible_groups
html
get_the_up_genes_for_group html
get_vs_random_pval html
load_dataset_10Xdata html
load_se_from_tables html
make_ranking_violin_plot html
make_ref_similarity_names html
make_ref_similarity_names_for_group html
run_pair_test_stats html
subset_cells_by_group html
subset_se_cells_for_group_test html
trim_small_groups_and_low_expression_genes
html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'celaref' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'celaref' as celaref_1.2.0.zip
* DONE (celaref)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'celaref' successfully unpacked and MD5 sums checked