Samuel Zimmerman
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/attract |
| Branch: RELEASE_3_9 |
| Last Commit: 0b9e868 |
| Last Changed Date: 2019-05-02 11:53:14 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:23:57 -0400 (Wed, 16 Oct 2019).
| Package 93/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| attract 1.36.0 Samuel Zimmerman
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: attract |
| Version: 1.36.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:attract.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings attract_1.36.0.tar.gz |
| StartedAt: 2019-10-16 02:01:50 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 02:11:02 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 552.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: attract.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:attract.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings attract_1.36.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/attract.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'attract/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'attract' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'attract' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotsynexprs: warning in axis(1, at = tickMarks, lab = tickLabels):
partial argument match of 'lab' to 'labels'
removeFlatGenes: warning in topTable(fit2, coef =
(1:(length(my.contrasts))), adjust = "fdr", n = nrow(dat.fr)):
partial argument match of 'n' to 'number'
removeFlatGenes: warning in topTable(fit2, coef =
(1:(length(my.contrasts))), adjust = "fdr", n = nrow(dat.fr)):
partial argument match of 'adjust' to 'adjust.method'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
calcFuncSynexprs 85.11 4.52 91.36
findAttractors 50.94 2.26 62.64
findCorrPartners 7.81 0.00 9.05
findSynexprs 5.19 0.03 6.45
plotsynexprs 5.08 0.01 7.05
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
calcFuncSynexprs 93.89 3.14 98.76
findAttractors 52.91 2.11 56.71
findCorrPartners 6.06 0.23 7.84
plotsynexprs 5.31 0.00 6.56
findSynexprs 5.14 0.00 6.70
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/attract.Rcheck/00check.log'
for details.
attract.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/attract_1.36.0.tar.gz && rm -rf attract.buildbin-libdir && mkdir attract.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=attract.buildbin-libdir attract_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL attract_1.36.0.zip && rm attract_1.36.0.tar.gz attract_1.36.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 4203k 100 4203k 0 0 35.9M 0 --:--:-- --:--:-- --:--:-- 38.3M
install for i386
* installing *source* package 'attract' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'attract'
finding HTML links ... done
AttractorModuleSet-class html
SynExpressionSet-class html
attract-package html
buildCorMatrix html
buildCustomIncidenceMatrix html
buildKeggIncidenceMatrix html
calcFuncSynexprs html
calcInform html
calcModfstat html
calcRss html
exprs.dat html
filterDataSet html
findAttractors html
findCorrPartners html
findOnepwaySynexprs html
findSynexprs html
flagPwayExists html
getCustomGenes html
getPwayGenes html
loring.eset html
plotsynexprs html
removeFlatGenes html
samp.info html
subset.loring.eset html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'attract' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'attract' as attract_1.36.0.zip
* DONE (attract)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'attract' successfully unpacked and MD5 sums checked
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attract.Rcheck/examples_i386/attract-Ex.timings
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attract.Rcheck/examples_x64/attract-Ex.timings
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