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BUILD report for SEPA on tokay2

This page was generated on 2019-10-16 12:33:26 -0400 (Wed, 16 Oct 2019).

Package 1487/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SEPA 1.14.0
Zhicheng Ji
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/SEPA
Branch: RELEASE_3_9
Last Commit: dc5024c
Last Changed Date: 2019-05-02 11:53:55 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: SEPA
Version: 1.14.0
Command: chmod a+r SEPA -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SEPA
StartedAt: 2019-10-15 23:28:48 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 23:29:55 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 67.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r SEPA -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SEPA
###
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* checking for file 'SEPA/DESCRIPTION' ... OK
* preparing 'SEPA':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'SEPA.Rnw' using knitr
Quitting from lines 65-67 (SEPA.Rnw) 
Error: processing vignette 'SEPA.Rnw' failed with diagnostics:
$ operator is invalid for atomic vectors
--- failed re-building 'SEPA.Rnw'

SUMMARY: processing the following file failed:
  'SEPA.Rnw'

Error: Vignette re-building failed.
Execution halted