Alex J. Cornish
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/SANTA |
| Branch: RELEASE_3_9 |
| Last Commit: b28cc79 |
| Last Changed Date: 2019-05-02 11:53:41 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:27:34 -0400 (Wed, 16 Oct 2019).
| Package 1453/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SANTA 2.22.0 Alex J. Cornish
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: SANTA |
| Version: 2.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SANTA_2.22.0.tar.gz && rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SANTA.buildbin-libdir SANTA_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SANTA_2.22.0.zip && rm SANTA_2.22.0.tar.gz SANTA_2.22.0.zip |
| StartedAt: 2019-10-15 18:57:43 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:58:51 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 67.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SANTA_2.22.0.tar.gz && rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SANTA.buildbin-libdir SANTA_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SANTA_2.22.0.zip && rm SANTA_2.22.0.tar.gz SANTA_2.22.0.zip
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install for i386
* installing *source* package 'SANTA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computenetK_fewzeros.c -o computenetK_fewzeros.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function 'computenetK_manyzeros':
computenetK_manyzeros.c:29:24: warning: assignment from incompatible pointer type
p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int));
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computenodeAUK.c -o computenodeAUK.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c computeweights.c -o computeweights.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SANTA.dll tmp.def computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/SANTA.buildbin-libdir/00LOCK-SANTA/00new/SANTA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SANTA'
finding HTML links ... done
BinGraph html
Compactness html
CreateGrid html
DistGraph html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeOdWfH/R.INSTALL670be356e6/SANTA/man/DistGraph.Rd:53: file link 'shortest.paths' in package 'igraph' does not exist and so has been treated as a topic
GraphDiffusion html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeOdWfH/R.INSTALL670be356e6/SANTA/man/GraphDiffusion.Rd:45: file link 'shortest.paths' in package 'igraph' does not exist and so has been treated as a topic
GraphMFPT html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeOdWfH/R.INSTALL670be356e6/SANTA/man/GraphMFPT.Rd:46: file link 'shortest.paths' in package 'igraph' does not exist and so has been treated as a topic
Knet html
Knode html
SANTA.data html
SpreadHits html
plot.Knet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SANTA' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computenetK_fewzeros.c -o computenetK_fewzeros.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function 'computenetK_manyzeros':
computenetK_manyzeros.c:29:24: warning: assignment from incompatible pointer type
p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int));
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computenodeAUK.c -o computenodeAUK.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c computeweights.c -o computeweights.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SANTA.dll tmp.def computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/SANTA.buildbin-libdir/SANTA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SANTA' as SANTA_2.22.0.zip
* DONE (SANTA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SANTA' successfully unpacked and MD5 sums checked