Martin Morgan
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/RaggedExperiment |
| Branch: RELEASE_3_9 |
| Last Commit: e3ff64d |
| Last Changed Date: 2019-05-02 11:54:06 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:38:15 -0400 (Wed, 16 Oct 2019).
| Package 1305/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RaggedExperiment 1.8.0 Martin Morgan
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RaggedExperiment |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RaggedExperiment_1.8.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.8.0.zip && rm RaggedExperiment_1.8.0.tar.gz RaggedExperiment_1.8.0.zip |
| StartedAt: 2019-10-15 20:04:18 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:05:00 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 42.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RaggedExperiment_1.8.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.8.0.zip && rm RaggedExperiment_1.8.0.tar.gz RaggedExperiment_1.8.0.zip
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install for i386
* installing *source* package 'RaggedExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RaggedExperiment'
finding HTML links ... done
RaggedExperiment-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:107: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:131: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:132: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:133: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:142: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:144: file link 'exonsBy' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:157: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:162: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:163: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:172: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:405: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp0IvcTB/R.INSTALL1ca46edc48a9/RaggedExperiment/man/RaggedExperiment-class.Rd:419: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
RaggedExperiment-package html
assay-functions html
coerce-functions html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RaggedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RaggedExperiment' as RaggedExperiment_1.8.0.zip
* DONE (RaggedExperiment)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'RaggedExperiment' successfully unpacked and MD5 sums checked