Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:07:01 -0400 (Wed, 16 Oct 2019).
Package 1249/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Prize 1.14.0 Daryanaz Dargahi
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Prize |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Prize.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Prize_1.14.0.tar.gz |
StartedAt: 2019-10-16 04:04:10 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 04:05:38 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 88.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Prize.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Prize.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Prize_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/Prize.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Prize/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Prize’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Prize’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed Prize-package 7.194 0.003 7.238 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Prize.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Prize ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘Prize’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Prize)
Prize.Rcheck/tests/runTests.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("Prize") Loading required package: shape Reading individual judgements. Aggregating individual judgements with geometric mean (AIJ). Computing group consistency ratio (GCR). Computing consensus index (CI). Reading individual judgements. Aggregating individual priorities with arithmetic mean (AIP). 0 Prioritization_of_DE_genes is processed. 1 Tumor_expression is processed. 2 Normal_expression is processed. 3 Frequency is processed. 4 Epitopes is processed. 4.1 Number_of_epitopes is processed. 4.2 Size_of_epitopes is processed. RUNIT TEST PROTOCOL -- Wed Oct 16 04:05:35 2019 *********************************************** Number of test functions: 5 Number of errors: 0 Number of failures: 0 1 Test Suite : Prize RUnit Tests - 5 test functions, 0 errors, 0 failures Number of test functions: 5 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 8.054 0.068 8.228
Prize.Rcheck/Prize-Ex.timings
name | user | system | elapsed | |
AIJ | 1.868 | 0.011 | 1.994 | |
AIP | 1.011 | 0.001 | 1.012 | |
CI | 1.701 | 0.000 | 1.701 | |
GCR | 2.208 | 0.008 | 2.216 | |
ICR | 3.065 | 0.000 | 3.065 | |
IP | 3.123 | 0.000 | 3.123 | |
Prize-package | 7.194 | 0.003 | 7.238 | |
RM | 0.312 | 0.000 | 0.312 | |
ahmatrix | 0.000 | 0.000 | 0.001 | |
ahp | 0.274 | 0.000 | 0.274 | |
ahp_matrix | 0.001 | 0.000 | 0.001 | |
ahp_plot | 2.141 | 0.005 | 2.145 | |
ahp_weights | 2.386 | 0.000 | 2.387 | |
ahplot | 0.044 | 0.000 | 0.045 | |
crplot | 0.286 | 0.000 | 0.286 | |
dplot | 0.114 | 0.000 | 0.114 | |
gaggregate | 4.110 | 0.004 | 4.116 | |
pipeline | 2.644 | 0.000 | 2.643 | |
rainbow_plot | 2.027 | 0.000 | 2.027 | |
rainbowplot | 0.226 | 0.000 | 0.227 | |
rating | 0.51 | 0.00 | 0.51 | |
saaty_inconsistency | 2.955 | 0.000 | 2.955 | |
simulation | 2.009 | 0.000 | 2.008 | |
weight | 0.672 | 0.000 | 0.673 | |
weight_plot | 2.138 | 0.000 | 2.138 | |
wplot | 0.397 | 0.000 | 0.398 | |