Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

INSTALL report for Organism.dplyr on tokay2

This page was generated on 2019-10-16 12:37:56 -0400 (Wed, 16 Oct 2019).

Package 1151/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Organism.dplyr 1.12.1
Martin Morgan
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/Organism.dplyr
Branch: RELEASE_3_9
Last Commit: 8dd95fc
Last Changed Date: 2019-05-10 10:43:52 -0400 (Fri, 10 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Organism.dplyr
Version: 1.12.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Organism.dplyr_1.12.1.tar.gz && rm -rf Organism.dplyr.buildbin-libdir && mkdir Organism.dplyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Organism.dplyr.buildbin-libdir Organism.dplyr_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Organism.dplyr_1.12.1.zip && rm Organism.dplyr_1.12.1.tar.gz Organism.dplyr_1.12.1.zip
StartedAt: 2019-10-15 20:43:32 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:44:42 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 70.0 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Organism.dplyr_1.12.1.tar.gz && rm -rf Organism.dplyr.buildbin-libdir && mkdir Organism.dplyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Organism.dplyr.buildbin-libdir Organism.dplyr_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Organism.dplyr_1.12.1.zip && rm Organism.dplyr_1.12.1.tar.gz Organism.dplyr_1.12.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  189k  100  189k    0     0  2786k      0 --:--:-- --:--:-- --:--:-- 3158k

install for i386

* installing *source* package 'Organism.dplyr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Organism.dplyr'
    finding HTML links ... done
    Genomic-Extractors                      html  
    finding level-2 HTML links ... done

    filter                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpa4xO2q/R.INSTALL248c4022b43/Organism.dplyr/man/filter.Rd:152: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpa4xO2q/R.INSTALL248c4022b43/Organism.dplyr/man/filter.Rd:155: file link 'select,src_organism-method' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    select                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpa4xO2q/R.INSTALL248c4022b43/Organism.dplyr/man/select.Rd:137: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    src                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpa4xO2q/R.INSTALL248c4022b43/Organism.dplyr/man/src.Rd:126: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpa4xO2q/R.INSTALL248c4022b43/Organism.dplyr/man/src.Rd:129: file link 'select,src_organism-method' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Organism.dplyr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Organism.dplyr' as Organism.dplyr_1.12.1.zip
* DONE (Organism.dplyr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Organism.dplyr' successfully unpacked and MD5 sums checked