Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:32:58 -0400 (Wed, 16 Oct 2019).
Package 1133/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
OmicsMarkeR 1.16.0 Charles E. Determan Jr.
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: OmicsMarkeR |
Version: 1.16.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmicsMarkeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings OmicsMarkeR_1.16.0.tar.gz |
StartedAt: 2019-10-16 05:41:43 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 05:47:54 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 371.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OmicsMarkeR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmicsMarkeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings OmicsMarkeR_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/OmicsMarkeR.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'OmicsMarkeR/DESCRIPTION' ... OK * this is package 'OmicsMarkeR' version '1.16.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'OmicsMarkeR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed perm.class 13.00 0.08 13.08 feature.table 11.89 0.18 12.08 performance.metrics 10.92 0.02 10.93 perm.features 10.55 0.09 10.64 predictNewClasses 9.96 0.06 10.03 fs.stability 9.57 0.08 9.66 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed perm.class 12.52 0.02 13.47 perm.features 10.42 0.00 10.42 performance.metrics 10.01 0.01 10.94 feature.table 9.86 0.09 9.96 predictNewClasses 9.89 0.00 9.91 fs.stability 9.44 0.02 9.77 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
OmicsMarkeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OmicsMarkeR_1.16.0.tar.gz && rm -rf OmicsMarkeR.buildbin-libdir && mkdir OmicsMarkeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmicsMarkeR.buildbin-libdir OmicsMarkeR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OmicsMarkeR_1.16.0.zip && rm OmicsMarkeR_1.16.0.tar.gz OmicsMarkeR_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 236k 100 236k 0 0 2576k 0 --:--:-- --:--:-- --:--:-- 2780k install for i386 * installing *source* package 'OmicsMarkeR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'OmicsMarkeR' finding HTML links ... done CLA html EE html EM html ES html RPT html aggregation html bagging.wrapper html canberra html canberra_stability html create.corr.matrix html create.discr.matrix html create.random.matrix html denovo.grid html extract.args html extract.features html feature.table html fit.only.model html fs.ensembl.stability html fs.stability html jaccard html kuncheva html modelList html modelTuner html modelTuner_loo html noise.matrix html ochiai html optimize.model html pairwise.model.stability html pairwise.stability html params html perf.calc html finding level-2 HTML links ... done performance.metrics html performance.stats html perm.class html perm.features html pof html predictNewClasses html predicting html prediction.metrics html sequester html sorensen html spearman html svm.weights html svmrfeFeatureRanking html svmrfeFeatureRankingForMulticlass html training html tune.instructions html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'OmicsMarkeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'OmicsMarkeR' as OmicsMarkeR_1.16.0.zip * DONE (OmicsMarkeR) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'OmicsMarkeR' successfully unpacked and MD5 sums checked
OmicsMarkeR.Rcheck/tests_i386/testthat.Rout R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(OmicsMarkeR) > > test_check("OmicsMarkeR") == testthat results =========================================================== [ OK: 100 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 53.81 0.57 55.76 |
OmicsMarkeR.Rcheck/tests_x64/testthat.Rout R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(OmicsMarkeR) > > test_check("OmicsMarkeR") == testthat results =========================================================== [ OK: 100 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 59.12 0.42 59.53 |
OmicsMarkeR.Rcheck/examples_i386/OmicsMarkeR-Ex.timings
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OmicsMarkeR.Rcheck/examples_x64/OmicsMarkeR-Ex.timings
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