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INSTALL report for MethylMix on tokay2

This page was generated on 2019-10-16 12:30:55 -0400 (Wed, 16 Oct 2019).

Package 982/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MethylMix 2.14.0
Olivier Gevaert
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/MethylMix
Branch: RELEASE_3_9
Last Commit: 3cde4ad
Last Changed Date: 2019-05-02 11:53:49 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MethylMix
Version: 2.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MethylMix_2.14.0.tar.gz && rm -rf MethylMix.buildbin-libdir && mkdir MethylMix.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MethylMix.buildbin-libdir MethylMix_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MethylMix_2.14.0.zip && rm MethylMix_2.14.0.tar.gz MethylMix_2.14.0.zip
StartedAt: 2019-10-15 19:13:59 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:14:40 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 41.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MethylMix_2.14.0.tar.gz && rm -rf MethylMix.buildbin-libdir && mkdir MethylMix.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MethylMix.buildbin-libdir MethylMix_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MethylMix_2.14.0.zip && rm MethylMix_2.14.0.tar.gz MethylMix_2.14.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2583k  100 2583k    0     0   9.9M      0 --:--:-- --:--:-- --:--:-- 10.2M

install for i386

* installing *source* package 'MethylMix' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MethylMix'
    finding HTML links ... done
    BatchData                               html  
    ClusterProbes                           html  
    ComBat_NoFiles                          html  
    Download_DNAmethylation                 html  
    Download_GeneExpression                 html  
    GEcancer                                html  
    GetData                                 html  
    METcancer                               html  
    METnormal                               html  
    MethylMix                               html  
    MethylMix_MixtureModel                  html  
    MethylMix_ModelGeneExpression           html  
    MethylMix_ModelSingleGene               html  
    MethylMix_PlotModel                     html  
    MethylMix_Predict                       html  
    MethylMix_RemoveFlipOver                html  
    Preprocess_CancerSite_Methylation27k    html  
    Preprocess_CancerSite_Methylation450k   html  
    Preprocess_DNAmethylation               html  
    Preprocess_GeneExpression               html  
    Preprocess_MAdata_Cancer                html  
    Preprocess_MAdata_Normal                html  
    ProbeAnnotation                         html  
    SNPprobes                               html  
    TCGA_BatchCorrection_MolecularData      html  
    TCGA_GENERIC_BatchCorrection            html  
    TCGA_GENERIC_CheckBatchEffect           html  
    TCGA_GENERIC_CleanUpSampleNames         html  
    TCGA_GENERIC_GetSampleGroups            html  
    TCGA_GENERIC_LoadIlluminaMethylationData
                                            html  
    TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust
                                            html  
    TCGA_GENERIC_MergeData                  html  
    TCGA_Load_MolecularData                 html  
    TCGA_Process_EstimateMissingValues      html  
    betaEst_2                               html  
    blc_2                                   html  
    combineForEachOutput                    html  
    get_firehoseData                        html  
    predictOneGene                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MethylMix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MethylMix' as MethylMix_2.14.0.zip
* DONE (MethylMix)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MethylMix' successfully unpacked and MD5 sums checked