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This page was generated on 2019-10-16 12:22:15 -0400 (Wed, 16 Oct 2019).
Package 760/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
HilbertVisGUI 1.42.0 Simon Anders
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... |
Package: HilbertVisGUI |
Version: 1.42.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch HilbertVisGUI |
StartedAt: 2019-10-15 19:02:02 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 19:07:51 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 349.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch HilbertVisGUI ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' * installing *source* package 'HilbertVisGUI' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c R_env_prot.c -o R_env_prot.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_interface.cc -o R_interface.o In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/include/R.h:91:0, from R_interface.cc:17: C:/Users/biocbuild/bbs-3.9-bioc/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined #define ERROR ),error(R_problem_buf);} ^ In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0, from R_interface.cc:13: C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition #define ERROR 0 ^ R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)': R_interface.cc:510:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int i = 0; i < palette_steps->size(); i++ ) ^ R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable] double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4; ^ R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)': R_interface.cc:702:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int i = 0; i < palette_steps->size(); i++ ) ^ R_interface.cc: In member function 'double RDataVector::get_bin_value(long int, long int) const [with data_el_t = int]': R_interface.cc:135:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] if( INTEGER(data)[i] < val ) ^ R_interface.cc: In member function 'double RDataVector ::get_bin_value(long int, long int) const [with data_el_t = double]': R_interface.cc:196:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] if( REAL(data)[i] < val ) ^ C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c colorizers.cc -o colorizers.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c display.cc -o display.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ruler.cc -o ruler.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c window.cc -o window.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm64/lib -Lc:/devel/dist/win64/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/biocbuild/bbs-3.9-bioc/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/R/library/00LOCK-HilbertVisGUI/00new/HilbertVisGUI/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'HilbertVisGUI' finding HTML links ... done dotsapply html hilbertDisplay html hilbertDisplayThreeChannel html simpleLinPlot html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertVisGUI) Making 'packages.html' ... done