Package: DEGseq

Version: 1.38.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEGseq_1.38.0.tar.gz && rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGseq.buildbin-libdir DEGseq_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEGseq_1.38.0.zip && rm DEGseq_1.38.0.tar.gz DEGseq_1.38.0.zip

StartedAt: 2019-10-15 19:07:54 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:09:02 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 68.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEGseq_1.38.0.tar.gz && rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGseq.buildbin-libdir DEGseq_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEGseq_1.38.0.zip && rm DEGseq_1.38.0.tar.gz DEGseq_1.38.0.zip
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install for i386

* installing *source* package 'DEGseq' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c getGeneExp.cpp -o getGeneExp.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEGseq.buildbin-libdir/00LOCK-DEGseq/00new/DEGseq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEGseq'
    finding HTML links ... done
    DEGexp                                  html  
    DEGexp2                                 html  
    DEGseq                                  html  
    GeneExpExample1000                      html  
    GeneExpExample5000                      html  
    getGeneExp                              html  
    kidneyChr21.bed                         html  
    kidneyChr21Bowtie                       html  
    liverChr21.bed                          html  
    liverChr21Bowtie                        html  
    readGeneExp                             html  
    refFlatChr21                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEGseq' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c getGeneExp.cpp -o getGeneExp.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEGseq.buildbin-libdir/DEGseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEGseq' as DEGseq_1.38.0.zip
* DONE (DEGseq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DEGseq' successfully unpacked and MD5 sums checked