Back to Multiple platform build/check report for BioC 3.9
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for ChIC on celaya2

This page was generated on 2019-10-16 13:02:19 -0400 (Wed, 16 Oct 2019).

Package 252/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIC 1.4.0
Carmen Maria Livi
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ChIC
Branch: RELEASE_3_9
Last Commit: bd51788
Last Changed Date: 2019-05-02 11:54:11 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 ...NOT SUPPORTED...
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: ChIC
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChIC
StartedAt: 2019-10-15 23:30:08 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 23:32:28 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 140.4 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChIC
###
##############################################################################
##############################################################################


* checking for file ‘ChIC/DESCRIPTION’ ... OK
* preparing ‘ChIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChIC-Vignette.Rnw’ using Sweave
Loading required package: spp
Loading required package: Rcpp
Filter tags
SKIP select.informative.tags filter
remove.local.tag.anomalies filter

Broad regions of enrichment
checking chromosomes
load chrom_info
load chrom_info

Binding sites detection fdr
Window Tag Density method - WTD

Binding sites detection evalue

Error: processing vignette 'ChIC-Vignette.Rnw' failed with diagnostics:
 chunk 12 
Error : 'points_withinFunction' is not an exported object from 'namespace:spp'

--- failed re-building ‘ChIC-Vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘ChIC-Vignette.Rnw’

Error: Vignette re-building failed.
Execution halted