Package: COSNet

Version: 1.18.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/COSNet_1.18.0.tar.gz && rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COSNet.buildbin-libdir COSNet_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL COSNet_1.18.0.zip && rm COSNet_1.18.0.tar.gz COSNet_1.18.0.zip

StartedAt: 2019-10-15 18:39:07 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 18:39:50 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 43.4 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/COSNet_1.18.0.tar.gz && rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COSNet.buildbin-libdir COSNet_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL COSNet_1.18.0.zip && rm COSNet_1.18.0.tar.gz COSNet_1.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
  0     0    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
100 24686  100 24686    0     0   8779      0  0:00:02  0:00:02 --:--:--  8822

install for i386

* installing *source* package 'COSNet' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c COSNet.c -o COSNet.o
COSNet.c: In function 'error_minimization':
COSNet.c:409:9: warning: 'theta_best_over' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double theta_best_over, theta_best_under=0,tmp_hmean_under, tmp_hmean_over;   
         ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/COSNet.buildbin-libdir/00LOCK-COSNet/00new/COSNet/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'COSNet'
    finding HTML links ... done
    COSNet-package                          html  
    COSNet                                  html  
    cosnet.cross.validation                 html  
    find.division.not.strat                 html  
    find.division.strat                     html  
    generate_labels                         html  
    generate_points                         html  
    optimize_pos_above                      html  
    optimizep                               html  
    reg_data                                html  
    runSubnet                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
COSNet: Cost-Sensitive algorithm for binary classification in graphs.
** testing if installed package can be loaded from final location
COSNet: Cost-Sensitive algorithm for binary classification in graphs.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'COSNet' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c COSNet.c -o COSNet.o
COSNet.c: In function 'error_minimization':
COSNet.c:460:2: warning: 'theta_best_over' may be used uninitialized in this function [-Wmaybe-uninitialized]
  compute_best_c(*n, tp_u, fp_u, tn_u, fn_u, labels, c_values, order_c_values, &max_F, &c_best, theta_best);   
  ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/COSNet.buildbin-libdir/COSNet/libs/x64
** testing if installed package can be loaded
COSNet: Cost-Sensitive algorithm for binary classification in graphs.
* MD5 sums
packaged installation of 'COSNet' as COSNet_1.18.0.zip
* DONE (COSNet)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'COSNet' successfully unpacked and MD5 sums checked