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BUILD BIN report for CNVtools on tokay2

This page was generated on 2019-10-16 12:23:04 -0400 (Wed, 16 Oct 2019).

Package 313/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVtools 1.78.0
Chris Barnes
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/CNVtools
Branch: RELEASE_3_9
Last Commit: dc7854f
Last Changed Date: 2019-05-02 11:53:13 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNVtools
Version: 1.78.0
Command: rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVtools.buildbin-libdir CNVtools_1.78.0.tar.gz
StartedAt: 2019-10-16 08:56:46 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 08:57:24 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 38.0 seconds
RetCode: 0
Status:  OK  
PackageFile: CNVtools_1.78.0.zip
PackageFileSize: 1.401 MiB

Command output

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###
### Running command:
###
###   rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVtools.buildbin-libdir CNVtools_1.78.0.tar.gz
###
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install for i386

* installing *source* package 'CNVtools' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fitmodel.cpp -o fitmodel.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c glm_test.cpp -o glm_test.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mla.cpp -o mla.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c routine.cpp -o routine.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c zeroin.c -o zeroin.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o CNVtools.dll tmp.def fitmodel.o glm_test.o mla.o routine.o zeroin.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CNVtools.buildbin-libdir/00LOCK-CNVtools/00new/CNVtools/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVtools'
    finding HTML links ... done
    A112                                    html  
    CNV.fitModel                            html  
    CNVtest.binary                          html  
    CNVtest.binary.T                        html  
    CNVtest.qt                              html  
    CNVtest.qt.T                            html  
    CNVtest.select.model                    html  
    CNVtools-package                        html  
    EM.starting.point                       html  
    ExpandData                              html  
    apply.ldf                               html  
    apply.pca                               html  
    cnv.plot                                html  
    compact.data.frame                      html  
    get.model.spec                          html  
    getQualityScore                         html  
    getparams                               html  
    qt.plot                                 html  
    test.posterior                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNVtools' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c fitmodel.cpp -o fitmodel.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c glm_test.cpp -o glm_test.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mla.cpp -o mla.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c routine.cpp -o routine.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c zeroin.c -o zeroin.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o CNVtools.dll tmp.def fitmodel.o glm_test.o mla.o routine.o zeroin.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CNVtools.buildbin-libdir/CNVtools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVtools' as CNVtools_1.78.0.zip
* DONE (CNVtools)