Package: BUScorrect

Version: 1.2.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BUScorrect_1.2.1.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.2.1.zip && rm BUScorrect_1.2.1.tar.gz BUScorrect_1.2.1.zip

StartedAt: 2019-10-15 20:03:15 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:04:08 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 52.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BUScorrect_1.2.1.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.2.1.zip && rm BUScorrect_1.2.1.tar.gz BUScorrect_1.2.1.zip
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install for i386

* installing *source* package 'BUScorrect' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c BUS_Cfunctions.c -o BUS_Cfunctions.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BUScorrect.buildbin-libdir/00LOCK-BUScorrect/00new/BUScorrect/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BUScorrect'
    finding HTML links ... done
    BIC_BUS                                 html  
    BUScorrect-package                      html  
    BUSexample_data                         html  
    BUSgibbs                                html  
    IG_index                                html  
    Subtypes                                html  
    adjusted_values                         html  
    baseline_expression_values              html  
    calculate_EPSR_gamma                    html  
    calculate_EPSR_mu                       html  
    calculate_EPSR_sigma_sq                 html  
    estimate_IG_indicators                  html  
    location_batch_effects                  html  
    postprob_DE                             html  
    postprob_DE_thr_fun                     html  
    print.BUSfits                           html  
    scale_batch_effects                     html  
    subtype_effects                         html  
    summary.BUSfits                         html  
    visualize_data                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BUScorrect' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c BUS_Cfunctions.c -o BUS_Cfunctions.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BUScorrect.buildbin-libdir/BUScorrect/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BUScorrect' as BUScorrect_1.2.1.zip
* DONE (BUScorrect)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BUScorrect' successfully unpacked and MD5 sums checked