Cuilan lani Gao
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/AGDEX |
| Branch: RELEASE_3_9 |
| Last Commit: 254ad2c |
| Last Changed Date: 2019-05-02 11:53:30 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:25:43 -0400 (Wed, 16 Oct 2019).
| Package 37/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| AGDEX 1.32.0 Cuilan lani Gao
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: AGDEX |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/AGDEX_1.32.0.tar.gz && rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL AGDEX_1.32.0.zip && rm AGDEX_1.32.0.tar.gz AGDEX_1.32.0.zip |
| StartedAt: 2019-10-15 19:11:22 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:13:21 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 118.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/AGDEX_1.32.0.tar.gz && rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL AGDEX_1.32.0.zip && rm AGDEX_1.32.0.tar.gz AGDEX_1.32.0.zip
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install for i386
* installing *source* package 'AGDEX' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AGDEX'
finding HTML links ... done
AGDEX-package html
agdex html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/agdex.Rd:91: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/agdex.Rd:93: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
agdex.res html
agdex.scatterplot html
get.gset.result.details html
gset.data html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/gset.data.Rd:24: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
human.data html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/human.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
make.dex.set.object html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/make.dex.set.object.Rd:37: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/make.dex.set.object.Rd:39: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
map.data html
mouse.data html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOM3FmN/R.INSTALLae07a0453bf/AGDEX/man/mouse.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
read.agdex.gset.details html
read.agdex.result html
write.agdex.gset.details html
write.agdex.result html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AGDEX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AGDEX' as AGDEX_1.32.0.zip
* DONE (AGDEX)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'AGDEX' successfully unpacked and MD5 sums checked