Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:42:30 -0400 (Tue, 09 Apr 2019).
Package 1631/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
transite 1.1.2 Konstantin Krismer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: transite |
Version: 1.1.2 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/transite_1.1.2.tar.gz && rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.1.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL transite_1.1.2.zip && rm transite_1.1.2.tar.gz transite_1.1.2.zip |
StartedAt: 2019-04-08 19:42:18 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 19:43:56 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 98.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/transite_1.1.2.tar.gz && rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.1.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL transite_1.1.2.zip && rm transite_1.1.2.tar.gz transite_1.1.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 591k 100 591k 0 0 3986k 0 --:--:-- --:--:-- --:--:-- 4168k install for i386 * installing *source* package 'transite' ... ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c scoring.cpp -o scoring.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/transite.buildbin-libdir/00LOCK-transite/00new/transite/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'transite' finding HTML links ... done RBPMotif-class html SpectrumScore-class html calculateKmerEnrichment html calculateKmerScores html calculateLocalConsistency html calculateMotifEnrichment html calculateTranscriptMC html checkKmers html computeKmerEnrichment html computeMotifScore html createKmerMotif html createMatrixMotif html drawVolcanoPlot html empiricalEnrichmentMeanCDF html ge html generateIUPACByKmers html generateIUPACByMatrix html generateKmers html generateKmersFromIUPAC html generatePermutedEnrichments html geometricMean html getMotifById html getMotifByRBP html getMotifs html getPPM html homopolymerCorrection html initIUPAClookupTable html kmers.enrichment html lookupKmerScores html motifs html motifsMetaInfo html pCombine html permTestGeometricMean html runKmerSPMA html runKmerTSMA html runMatrixSPMA html runMatrixTSMA html scoreSequences html scoreSpectrum html scoreTranscripts html scoreTranscriptsSingleMotif html setMotifs html spectrumClassifier html subdivideData html toy.motif.matrix html transite html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'transite' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c scoring.cpp -o scoring.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/transite.buildbin-libdir/transite/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'transite' as transite_1.1.2.zip * DONE (transite) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'transite' successfully unpacked and MD5 sums checked