Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:59:49 -0400 (Tue, 09 Apr 2019).
Package 1579/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
sva 3.31.1 Jeffrey T. Leek
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: sva |
Version: 3.31.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sva_3.31.1.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.31.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sva_3.31.1.zip && rm sva_3.31.1.tar.gz sva_3.31.1.zip |
StartedAt: 2019-04-08 19:08:40 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 19:09:30 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 50.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sva_3.31.1.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.31.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sva_3.31.1.zip && rm sva_3.31.1.tar.gz sva_3.31.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 199k 100 199k 0 0 1967k 0 --:--:-- --:--:-- --:--:-- 2119k install for i386 * installing *source* package 'sva' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sva.c -o sva.o sva.c:30:1: warning: missing braces around initializer [-Wmissing-braces] }; ^ sva.c:30:1: warning: (near initialization for 'callMethods[1]') [-Wmissing-braces] C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sva' finding HTML links ... done ComBat html empirical.controls html f.pvalue html fstats html fsva html irwsva.build html num.sv html psva html qsva html read.degradation.matrix html ssva html sva html sva.check html sva_network html svaseq html twostepsva.build html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sva' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sva.c -o sva.o sva.c:30:1: warning: missing braces around initializer [-Wmissing-braces] }; ^ sva.c:30:1: warning: (near initialization for 'callMethods[1]') [-Wmissing-braces] C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sva.buildbin-libdir/sva/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'sva' as sva_3.31.1.zip * DONE (sva) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'sva' successfully unpacked and MD5 sums checked