Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:23:46 -0400 (Tue, 09 Apr 2019).
Package 1566/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
stepNorm 1.55.0 Yuanyuan Xiao
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: stepNorm |
Version: 1.55.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:stepNorm.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings stepNorm_1.55.0.tar.gz |
StartedAt: 2019-04-09 03:55:13 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 03:56:37 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 83.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: stepNorm.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:stepNorm.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings stepNorm_1.55.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/stepNorm.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘stepNorm/DESCRIPTION’ ... OK * this is package ‘stepNorm’ version ‘1.55.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘stepNorm’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘marray’ ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE loess2Dfit: warning in loess.control(trace.hat = "approximate", iteration = 5, surface = "direct"): partial argument match of 'iteration' to 'iterations' loessfit: warning in loess.control(trace.hat = "approximate", iteration = 5, surface = "direct"): partial argument match of 'iteration' to 'iterations' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed stepWithinNorm 23.484 0.028 23.527 fitWithin 21.346 0.020 21.387 fit2DWithin 9.589 0.019 9.611 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/stepNorm.Rcheck/00check.log’ for details.
stepNorm.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL stepNorm ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘stepNorm’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stepNorm)
stepNorm.Rcheck/stepNorm-Ex.timings
name | user | system | elapsed | |
calcAIC | 0.163 | 0.004 | 0.190 | |
calcBIC | 0.105 | 0.016 | 0.121 | |
fit2DWithin | 9.589 | 0.019 | 9.611 | |
fitWithin | 21.346 | 0.020 | 21.387 | |
maCompPlate2 | 0.011 | 0.000 | 0.011 | |
makeStepList | 0.047 | 0.000 | 0.048 | |
marrayFitClass | 0.063 | 0.004 | 0.068 | |
seqWithinNorm | 0.220 | 0.004 | 0.224 | |
stepWithinNorm | 23.484 | 0.028 | 23.527 | |
withinNorm | 0.047 | 0.000 | 0.048 | |