Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:35:58 -0400 (Tue, 09 Apr 2019).
Package 1334/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rfPred 1.21.0 Hugo Varet
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: rfPred |
Version: 1.21.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:rfPred.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings rfPred_1.21.0.tar.gz |
StartedAt: 2019-04-09 03:10:06 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 03:11:39 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 92.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rfPred.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:rfPred.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings rfPred_1.21.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/rfPred.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rfPred/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rfPred’ version ‘1.21.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rfPred’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘Rsamtools’ which was already attached by Depends. Please remove these calls from your code. Packages in Depends field not imported from: ‘IRanges’ ‘Rsamtools’ ‘data.table’ ‘methods’ ‘parallel’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE rfPred_scores_motor: no visible global function definition for ‘as.data.table’ rfPred_scores_motor: no visible global function definition for ‘IRanges’ rfPred_scores_motor: no visible global function definition for ‘scanTabix’ rfPred_scores_motor: no visible global function definition for ‘TabixFile’ rfPred_scores_motor: no visible global function definition for ‘makeCluster’ rfPred_scores_motor: no visible global function definition for ‘parLapply’ rfPred_scores_motor: no visible global function definition for ‘clusterSplit’ rfPred_scores_motor : <anonymous>: no visible global function definition for ‘scanTabix’ rfPred_scores_motor: no visible global function definition for ‘stopCluster’ rfPred_scores_motor: no visible global function definition for ‘write.csv2’ rfPred_scores,GRanges: no visible global function definition for ‘seqlevels<-’ rfPred_scores,GRanges: no visible global function definition for ‘seqlevels’ rfPred_scores,character: no visible global function definition for ‘read.table’ Undefined global functions or variables: IRanges TabixFile as.data.table clusterSplit makeCluster parLapply read.table scanTabix seqlevels seqlevels<- stopCluster write.csv2 Consider adding importFrom("utils", "read.table", "write.csv2") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed rfPred_scores-methods 9.77 0.041 2.542 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/rfPred.Rcheck/00check.log’ for details.
rfPred.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL rfPred ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘rfPred’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c outstring.c -o outstring.o gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o rfPred.so outstring.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-rfPred/00new/rfPred/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rfPred)
rfPred.Rcheck/rfPred-Ex.timings
name | user | system | elapsed | |
rfPred_scores-methods | 9.770 | 0.041 | 2.542 | |