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INSTALL report for proBatch on tokay2

This page was generated on 2019-04-09 12:45:21 -0400 (Tue, 09 Apr 2019).

Package 1226/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
proBatch 0.99.25
Chloe H. Lee
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/proBatch
Branch: master
Last Commit: 4182ac6
Last Changed Date: 2019-03-13 08:00:44 -0400 (Wed, 13 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: proBatch
Version: 0.99.25
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/proBatch_0.99.25.tar.gz && rm -rf proBatch.buildbin-libdir && mkdir proBatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proBatch.buildbin-libdir proBatch_0.99.25.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL proBatch_0.99.25.zip && rm proBatch_0.99.25.tar.gz proBatch_0.99.25.zip
StartedAt: 2019-04-08 20:24:23 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:25:28 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 65.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/proBatch_0.99.25.tar.gz && rm -rf proBatch.buildbin-libdir && mkdir proBatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proBatch.buildbin-libdir proBatch_0.99.25.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL proBatch_0.99.25.zip && rm proBatch_0.99.25.tar.gz proBatch_0.99.25.zip
###
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100 1299k  100 1299k    0     0  17.2M      0 --:--:-- --:--:-- --:--:-- 18.6M

install for i386

* installing *source* package 'proBatch' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'proBatch'
    finding HTML links ... done
    adjust_batch_trend                      html  
    center_peptide_batch_medians            html  
    color_list_to_df                        html  
    correct_batch_effects                   html  
    correct_with_ComBat                     html  
    create_peptide_annotation               html  
    date_to_sample_order                    html  
    dates_to_posix                          html  
    dot-corr_distribution                   html  
    dot-corr_distribution_prot              html  
    example_peptide_annotation              html  
    example_proteome                        html  
    example_proteome_matrix                 html  
    example_sample_annotation               html  
    fit_nonlinear                           html  
    generate_colors_for_numeric             html  
    get_peptide_corr_df                     html  
    get_sample_corr_distrib                 html  
    log_transform                           html  
    long_to_matrix                          html  
    matrix_to_long                          html  
    merge_rare_levels                       html  
    normalize                               html  
    normalize_data                          html  
    normalize_sample_medians                html  
    plot_PCA                                html  
    plot_PVCA                               html  
    plot_corr_matrix                        html  
    plot_heatmap                            html  
    plot_hierarchical_clustering            html  
    plot_iRT                                html  
    plot_peptide_corr_distribution          html  
    plot_peptides_of_one_protein            html  
    plot_protein_corrplot                   html  
    plot_sample_corr_distribution           html  
    plot_sample_corr_heatmap                html  
    plot_sample_mean_or_boxplot             html  
    plot_single_feature                     html  
    plot_spike_in                           html  
    plot_with_fitting_curve                 html  
    proBatch                                html  
    quantile_normalize                      html  
    sample_annotation_to_colors             html  
    sample_color_scheme                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'proBatch' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'proBatch' as proBatch_0.99.25.zip
* DONE (proBatch)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'proBatch' successfully unpacked and MD5 sums checked