Federico Marini
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/pcaExplorer |
| Branch: master |
| Last Commit: 7c5658b |
| Last Changed Date: 2019-02-27 11:51:06 -0400 (Wed, 27 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:26:27 -0400 (Tue, 09 Apr 2019).
| Package 1160/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pcaExplorer 2.9.5 Federico Marini
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: pcaExplorer |
| Version: 2.9.5 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pcaExplorer.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings pcaExplorer_2.9.5.tar.gz |
| StartedAt: 2019-04-09 04:48:45 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 04:59:07 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 621.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pcaExplorer.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pcaExplorer.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings pcaExplorer_2.9.5.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/pcaExplorer.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'pcaExplorer/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pcaExplorer' version '2.9.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pcaExplorer' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE pcaExplorer: no visible binding for '<<-' assignment to 'pcaexplorer_env' pcaExplorer : <anonymous>: no visible binding for global variable 'airway' pcaExplorer : <anonymous>: no visible binding for global variable 'pcaexplorer_env' Undefined global functions or variables: airway pcaexplorer_env * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/pcaExplorer.Rcheck/00check.log' for details.
pcaExplorer.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/pcaExplorer_2.9.5.tar.gz && rm -rf pcaExplorer.buildbin-libdir && mkdir pcaExplorer.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaExplorer.buildbin-libdir pcaExplorer_2.9.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL pcaExplorer_2.9.5.zip && rm pcaExplorer_2.9.5.tar.gz pcaExplorer_2.9.5.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
27 22.0M 27 6288k 0 0 29.0M 0 --:--:-- --:--:-- --:--:-- 29.8M
100 22.0M 100 22.0M 0 0 26.9M 0 --:--:-- --:--:-- --:--:-- 27.1M
install for i386
* installing *source* package 'pcaExplorer' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'pcaExplorer'
finding HTML links ... done
correlatePCs html
distro_expr html
finding level-2 HTML links ... done
geneprofiler html
genespca html
get_annotation html
get_annotation_orgdb html
hi_loadings html
limmaquickpca2go html
makeExampleDESeqDataSet_multifac html
pair_corr html
pca2go html
pcaExplorer-pkg html
pcaExplorer html
pcaplot html
pcaplot3d html
pcascree html
plotPCcorrs html
topGOtable html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pcaExplorer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pcaExplorer' as pcaExplorer_2.9.5.zip
* DONE (pcaExplorer)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'pcaExplorer' successfully unpacked and MD5 sums checked
|
pcaExplorer.Rcheck/tests_i386/testthat.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(pcaExplorer)
Welcome to pcaExplorer v2.9.5
If you use pcaExplorer in your work, please cite:
Federico Marini, Harald Binder
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
biorXiv, 2018 - https://doi.org/10.1101/493551
>
> test_check("pcaExplorer")
== testthat results ===========================================================
OK: 18 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
85.18 3.48 88.79
|
pcaExplorer.Rcheck/tests_x64/testthat.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(pcaExplorer)
Welcome to pcaExplorer v2.9.5
If you use pcaExplorer in your work, please cite:
Federico Marini, Harald Binder
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
biorXiv, 2018 - https://doi.org/10.1101/493551
>
> test_check("pcaExplorer")
== testthat results ===========================================================
OK: 18 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
90.76 1.65 92.42
|
|
pcaExplorer.Rcheck/examples_i386/pcaExplorer-Ex.timings
|
pcaExplorer.Rcheck/examples_x64/pcaExplorer-Ex.timings
|