networkBMA 2.23.0
Ka Yee Yeung
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/networkBMA |
| Branch: master |
| Last Commit: 06406b4 |
| Last Changed Date: 2018-10-30 11:54:30 -0400 (Tue, 30 Oct 2018) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | [ ERROR ] | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### chmod a+r networkBMA -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data networkBMA
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* checking for file 'networkBMA/DESCRIPTION' ... OK
* preparing 'networkBMA':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package 'networkBMA' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DWIN=1 -DUSE_RBLAS -I./include -I. -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c MurmurHash3.cpp -o MurmurHash3.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DWIN=1 -DUSE_RBLAS -I./include -I. -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DWIN=1 -DUSE_RBLAS -I./include -I. -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c ScanBMA_full.cpp -o ScanBMA_full.o
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/unordered_set:35:0,
from ScanBMA_full.cpp:18:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
#error This file requires compiler and library support for the \
^
ScanBMA_full.cpp: In function 'const List ScanBMA_BIC(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double)':
ScanBMA_full.cpp:137:45: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp:19:28: error: 'unordered_set' is not a member of 'std'
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:161:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE<std::string> checkedModels;
^
ScanBMA_full.cpp:19:28: note: suggested alternative:
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:161:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE<std::string> checkedModels;
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/tr1/unordered_set:42:0,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/platform/compiler.h:181,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:59,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:26,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
from ScanBMA_full.cpp:5:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/tr1/unordered_set.h:173:11: note: 'std::tr1::unordered_set'
class unordered_set
^
ScanBMA_full.cpp:161:33: error: expected primary-expression before '>' token
UNORDERED_SET_TYPE<std::string> checkedModels;
^
ScanBMA_full.cpp:161:35: error: 'checkedModels' was not declared in this scope
UNORDERED_SET_TYPE<std::string> checkedModels;
^
ScanBMA_full.cpp: In function 'const List BMA_Diff_BIC(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector, Rcpp::IntegerVector, double, double)':
ScanBMA_full.cpp:328:43: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp: In function 'const List ScanBMA_g(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double, double)':
ScanBMA_full.cpp:421:45: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp:19:28: error: 'unordered_set' is not a member of 'std'
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:445:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE<std::string> checkedModels;
^
ScanBMA_full.cpp:19:28: note: suggested alternative:
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:445:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE<std::string> checkedModels;
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/tr1/unordered_set:42:0,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/platform/compiler.h:181,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:59,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:26,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
from ScanBMA_full.cpp:5:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/tr1/unordered_set.h:173:11: note: 'std::tr1::unordered_set'
class unordered_set
^
ScanBMA_full.cpp:445:33: error: expected primary-expression before '>' token
UNORDERED_SET_TYPE<std::string> checkedModels;
^
ScanBMA_full.cpp:445:35: error: 'checkedModels' was not declared in this scope
UNORDERED_SET_TYPE<std::string> checkedModels;
^
ScanBMA_full.cpp: In function 'const List BMA_Diff_g(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector, Rcpp::IntegerVector, double, double)':
ScanBMA_full.cpp:614:43: warning: 'const arma::mtOp<unsigned int, T1, arma::op_sort_index> arma::sort_index(const arma::Base<typename T1::elem_type, T1>&, arma::uword) [with T1 = arma::Mat<double>; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
make: *** [ScanBMA_full.o] Error 1
ERROR: compilation failed for package 'networkBMA'
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAH7UaW/Rinst1c943a5c41c6/networkBMA'
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ERROR: package installation failed