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BUILD report for mixOmics on merida2

This page was generated on 2019-04-09 13:37:58 -0400 (Tue, 09 Apr 2019).

Package 1006/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mixOmics 6.7.1
Kim-Anh Le Cao
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/mixOmics
Branch: master
Last Commit: 6eb1ba6
Last Changed Date: 2019-03-28 21:09:37 -0400 (Thu, 28 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: mixOmics
Version: 6.7.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mixOmics
StartedAt: 2019-04-08 22:44:38 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:46:33 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 115.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mixOmics
###
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* checking for file ‘mixOmics/DESCRIPTION’ ... OK
* preparing ‘mixOmics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: MASS
Loading required package: lattice
Loading required package: ggplot2
Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang

Loaded mixOmics 6.7.1

Thank you for using mixOmics! Learn how to apply our methods with our tutorials on www.mixOmics.org, vignette and bookdown on  https://github.com/mixOmicsTeam/mixOmics
Questions: email us at mixomics[at]math.univ-toulouse.fr  
Bugs, Issues? https://github.com/mixOmicsTeam/mixOmics/issues
Cite us:  citation('mixOmics')
sh: line 1: 13483 Abort trap: 6           'convert' 'vignette_files/figure-html/overview-1.png' -trim 'vignette_files/figure-html/overview-1.png' > /dev/null
sh: line 1: 13494 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-6-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-6-1.png' > /dev/null
sh: line 1: 13496 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-6-2.png' -trim 'vignette_files/figure-html/unnamed-chunk-6-2.png' > /dev/null
sh: line 1: 13507 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-7-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-7-1.png' > /dev/null
sh: line 1: 13509 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-7-2.png' -trim 'vignette_files/figure-html/unnamed-chunk-7-2.png' > /dev/null
sh: line 1: 13512 Abort trap: 6           'convert' 'vignette_files/figure-html/overview-PCA-1.png' -trim 'vignette_files/figure-html/overview-PCA-1.png' > /dev/null
sh: line 1: 13590 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-9-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-9-1.png' > /dev/null
sh: line 1: 13592 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-9-2.png' -trim 'vignette_files/figure-html/unnamed-chunk-9-2.png' > /dev/null
sh: line 1: 13636 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-10-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-10-1.png' > /dev/null
sh: line 1: 13656 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-11-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-11-1.png' > /dev/null
sh: line 1: 13669 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-12-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-12-1.png' > /dev/null
sh: line 1: 13681 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-13-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-13-1.png' > /dev/null
sh: line 1: 13688 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-14-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-14-1.png' > /dev/null
sh: line 1: 13692 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-15-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-15-1.png' > /dev/null
Warning in shape.input.plotIndiv(object = object, n = n, blocks = blocks,  :
  'ind.names' is set to FALSE as 'pch' overrides it
sh: line 1: 13730 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-17-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-17-1.png' > /dev/null
sh: line 1: 13732 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-17-2.png' -trim 'vignette_files/figure-html/unnamed-chunk-17-2.png' > /dev/null
sh: line 1: 13742 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-19-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-19-1.png' > /dev/null
sh: line 1: 13753 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-20-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-20-1.png' > /dev/null
sh: line 1: 13759 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-21-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-21-1.png' > /dev/null
sh: line 1: 13763 Abort trap: 6           'convert' 'vignette_files/figure-html/overview-PLSDA-1.png' -trim 'vignette_files/figure-html/overview-PLSDA-1.png' > /dev/null
sh: line 1: 13803 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-23-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-23-1.png' > /dev/null
sh: line 1: 13808 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-23-2.png' -trim 'vignette_files/figure-html/unnamed-chunk-23-2.png' > /dev/null
sh: line 1: 13906 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-24-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-24-1.png' > /dev/null
sh: line 1: 13908 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-24-2.png' -trim 'vignette_files/figure-html/unnamed-chunk-24-2.png' > /dev/null
sh: line 1: 13921 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-25-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-25-1.png' > /dev/null
sh: line 1: 13927 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-26-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-26-1.png' > /dev/null
sh: line 1: 13936 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-27-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-27-1.png' > /dev/null
sh: line 1: 14077 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-28-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-28-1.png' > /dev/null
sh: line 1: 14085 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-29-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-29-1.png' > /dev/null
sh: line 1: 14089 Abort trap: 6           'convert' 'vignette_files/figure-html/unnamed-chunk-32-1.png' -trim 'vignette_files/figure-html/unnamed-chunk-32-1.png' > /dev/null
Warning in min(x) : no non-missing arguments to min; returning Inf
Warning in max(x) : no non-missing arguments to max; returning -Inf
Quitting from lines 754-760 (vignette.Rmd) 
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
need finite 'xlim' values
Execution halted