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BUILD BIN report for martini on tokay2

This page was generated on 2019-04-09 12:36:34 -0400 (Tue, 09 Apr 2019).

Package 902/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
martini 1.3.1
Hector Climente-Gonzalez
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/martini
Branch: master
Last Commit: 5710ce0
Last Changed Date: 2019-02-07 14:19:36 -0400 (Thu, 07 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: martini
Version: 1.3.1
Command: rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.3.1.tar.gz
StartedAt: 2019-04-09 08:23:33 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 08:25:09 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 96.3 seconds
RetCode: 0
Status:  OK  
PackageFile: martini_1.3.1.zip
PackageFileSize: 1.367 MiB

Command output

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### Running command:
###
###   rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.3.1.tar.gz
###
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install for i386

* installing *source* package 'martini' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:61:0,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:26,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
RcppExports.cpp: In function 'SEXPREC* _martini_run_scones_try(SEXP, SEXP, SEXP, SEXP)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:32:9: warning: unused variable 'nprot' [-Wunused-variable]
     int nprot = 0;                                                                               \
         ^
RcppExports.cpp:29:1: note: in expansion of macro 'BEGIN_RCPP'
 BEGIN_RCPP
 ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:36:17: warning: unused variable 'stop_sym' [-Wunused-variable]
     static SEXP stop_sym = Rf_install("stop");                                                   \
                 ^
RcppExports.cpp:29:1: note: in expansion of macro 'BEGIN_RCPP'
 BEGIN_RCPP
 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c evo.cpp -o evo.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c run_scones.cpp -o run_scones.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o evo.o run_scones.o C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib/i386/libgin.a C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib/i386/libmaxflow.a C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib/i386/libcephes.a -lz -pthread -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/martini.buildbin-libdir/00LOCK-martini/00new/martini/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'martini'
    finding HTML links ... done
    arrange_covars                          html  
    calculateE                              html  
    calculateG                              html  
    check_installed                         html  
    encode_gwas                             html  
    evo                                     html  
    get_GI_network                          html  
    get_GM_network                          html  
    get_GS_network                          html  
    get_evo_settings                        html  
    get_ppi                                 html  
    get_snp_modules                         html  
    is_coherent                             html  
    ldweight_edges                          html  
    minigwas                                html  
    minippi                                 html  
    minisnpMapping                          html  
    parse_scones_settings                   html  
    permute_snpMatrix                       html  
    run_scones                              html  
    scones                                  html  
    scones.cv                               html  
    score_fold                              html  
    search_cones                            html  
    simulate_causal_snps                    html  
    simulate_phenotype                      html  
    single_snp_association                  html  
    snp2gene                                html  
    subnet                                  html  
    subvert                                 html  
    test_cones_modules                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'martini' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:61:0,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:26,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
RcppExports.cpp: In function 'SEXPREC* _martini_run_scones_try(SEXP, SEXP, SEXP, SEXP)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:32:9: warning: unused variable 'nprot' [-Wunused-variable]
     int nprot = 0;                                                                               \
         ^
RcppExports.cpp:29:1: note: in expansion of macro 'BEGIN_RCPP'
 BEGIN_RCPP
 ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:36:17: warning: unused variable 'stop_sym' [-Wunused-variable]
     static SEXP stop_sym = Rf_install("stop");                                                   \
                 ^
RcppExports.cpp:29:1: note: in expansion of macro 'BEGIN_RCPP'
 BEGIN_RCPP
 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c evo.cpp -o evo.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c run_scones.cpp -o run_scones.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o evo.o run_scones.o C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib/x64/libgin.a C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib/x64/libmaxflow.a C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib/x64/libcephes.a -lz -pthread -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/martini.buildbin-libdir/martini/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'martini' as martini_1.3.1.zip
* DONE (martini)