Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:59:52 -0400 (Tue, 09 Apr 2019).
Package 820/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
isobar 1.29.1 Florian P Breitwieser
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: isobar |
Version: 1.29.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/isobar_1.29.1.tar.gz && rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=isobar.buildbin-libdir isobar_1.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL isobar_1.29.1.zip && rm isobar_1.29.1.tar.gz isobar_1.29.1.zip |
StartedAt: 2019-04-08 19:29:26 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 19:32:02 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 155.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/isobar_1.29.1.tar.gz && rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=isobar.buildbin-libdir isobar_1.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL isobar_1.29.1.zip && rm isobar_1.29.1.tar.gz isobar_1.29.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2189k 100 2189k 0 0 11.0M 0 --:--:-- --:--:-- --:--:-- 11.4M install for i386 * installing *source* package 'isobar' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for 'coerce' with signature '"MSnSet","IBSpectra"': no definition for class "MSnSet" in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "MSnSet" Note: possible error in 'png(sprintf("pairwise_correlation_%s.png", ': unused argument (title = "Pairwise Correlation plot") ** help *** installing help indices converting help for package 'isobar' finding HTML links ... done IBSpectra-class html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/IBSpectra-class.Rd:175: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/IBSpectra-class.Rd:176: missing file link 'MSnbase' Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/IBSpectra-class.Rd:178: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/IBSpectra-class.Rd:232: file link 'ProteinGroup' in package 'isobar' does not exist and so has been treated as a topic NoiseModel-class html ProteinGroup-class html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/ProteinGroup-class.Rd:177: file link 'IBSpectra' in package 'isobar' does not exist and so has been treated as a topic TlsParameter-class html Tlsd-class html calc.delta.score html calc.startpos html calculate-pvalues html calculate.dNSAF html calculate.emPAI html correct.peptide.ratios html distr-methods html fit-distr html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/fit-distr.Rd:28: file link 'Cauchy' in package 'distr' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpsfrC7u/R.INSTALL179c44654685/isobar/man/fit-distr.Rd:28: file link 'Norm' in package 'distr' does not exist and so has been treated as a topic getPeptideModifContext html getPhosphoRSProbabilities html getPtmInfo html groupMemberPeptides html human.protein.names html isobar-analysis html isobar-data html isobar-import html isobar-log html isobar-package html isobar-plots html isobar-preprocessing html isobar-reports html maplot.protein html number.ranges html observedKnownSites html peptide.count html proteinInfo-methods html proteinNameAndDescription html ratio-summ html ratiosReshapeWide html reporter.protein-methods html sanitize html shared.ratios html shared.ratios.sign html specificities html spectra.count2 html subsetIBSpectra html utils html writeHscoreData html writeIBSpectra html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'isobar' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'isobar' as isobar_1.29.1.zip * DONE (isobar) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'isobar' successfully unpacked and MD5 sums checked