Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:59:05 -0400 (Tue, 09 Apr 2019).
Package 811/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
inveRsion 1.31.0 Alejandro Caceres
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: inveRsion |
Version: 1.31.0 |
Command: rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=inveRsion.buildbin-libdir inveRsion_1.31.0.tar.gz |
StartedAt: 2019-04-09 08:17:49 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 08:18:27 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 38.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: inveRsion_1.31.0.zip |
PackageFileSize: 615 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=inveRsion.buildbin-libdir inveRsion_1.31.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'inveRsion' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init_inveRsion.c -o init_inveRsion.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c inversionModel.c -o inversionModel.o inversionModel.c: In function 'blockAndLev': inversionModel.c:185:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] if(dat[(*nr)*(c1)+row]==levelleft[level] & dat[(*nr)*(c2)+row]==levelright[level]) ^ inversionModel.c: In function 'inversionModel': inversionModel.c:360:15: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] while(steps<*maxSteps & tol>mintol) ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c writeGenoDat.c -o writeGenoDat.o writeGenoDat.c: In function 'writeGenoDat': writeGenoDat.c:34:16: warning: 'dat' may be used uninitialized in this function [-Wmaybe-uninitialized] int i,j,l,k,dat,nomiss[*numlevcaco],sum[*numlevcaco]; ^ C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o inveRsion.dll tmp.def init_inveRsion.o inversionModel.o writeGenoDat.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/inveRsion.buildbin-libdir/00LOCK-inveRsion/00new/inveRsion/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'inveRsion' finding HTML links ... done GenoDat-class html GenoDatROI-class html HaploCode-class html ac html accBic html accuracy-class html codeHaplo html gDat html getClassif-methods html getInv-methods html getROIs-methods html hapCode html invList html inveRsion-internal html inveRsion-package html inversion-class html inversionList-class html listInv-methods html scan-class html scanInv html scanRes html setUpGenoDatFile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'inveRsion' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init_inveRsion.c -o init_inveRsion.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c inversionModel.c -o inversionModel.o inversionModel.c: In function 'blockAndLev': inversionModel.c:185:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] if(dat[(*nr)*(c1)+row]==levelleft[level] & dat[(*nr)*(c2)+row]==levelright[level]) ^ inversionModel.c: In function 'inversionModel': inversionModel.c:360:15: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] while(steps<*maxSteps & tol>mintol) ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c writeGenoDat.c -o writeGenoDat.o writeGenoDat.c: In function 'writeGenoDat': writeGenoDat.c:34:16: warning: 'dat' may be used uninitialized in this function [-Wmaybe-uninitialized] int i,j,l,k,dat,nomiss[*numlevcaco],sum[*numlevcaco]; ^ C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o inveRsion.dll tmp.def init_inveRsion.o inversionModel.o writeGenoDat.o -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/inveRsion.buildbin-libdir/inveRsion/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'inveRsion' as inveRsion_1.31.0.zip * DONE (inveRsion)