Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:23:13 -0400 (Tue, 09 Apr 2019).
Package 694/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
goTools 1.57.0 Agnes Paquet
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: goTools |
Version: 1.57.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:goTools.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings goTools_1.57.0.tar.gz |
StartedAt: 2019-04-09 00:59:25 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:00:46 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 81.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: goTools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:goTools.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings goTools_1.57.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/goTools.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘goTools/DESCRIPTION’ ... OK * this is package ‘goTools’ version ‘1.57.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘goTools’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘GO.db’ A package should be listed in only one of these fields. * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE EndNodeList: warning in get("GO:0003674", env = GOMFCHILDREN): partial argument match of 'env' to 'envir' EndNodeList: warning in get("GO:0005575", env = GOCCCHILDREN): partial argument match of 'env' to 'envir' EndNodeList: warning in get("GO:0008150", env = GOBPCHILDREN): partial argument match of 'env' to 'envir' getGOID: warning in mget(x, env = GOenv): partial argument match of 'env' to 'envir' goChildren: warning in get(id, env = envi): partial argument match of 'env' to 'envir' goParents: warning in get(paste("GO", cat, "PARENTS", sep = ""), env = as.environment("package:GO.db")): partial argument match of 'env' to 'envir' goParents: warning in get(goid, env = envi): partial argument match of 'env' to 'envir' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/goTools.Rcheck/00check.log’ for details.
goTools.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL goTools ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘goTools’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goTools)
goTools.Rcheck/goTools-Ex.timings
name | user | system | elapsed | |
EndNodeList | 0 | 0 | 0 | |
ontoCompare | 0 | 0 | 0 | |