| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:31:48 -0400 (Tue, 09 Apr 2019).
| Package 468/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| easyRNASeq 2.19.2 Nicolas Delhomme
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: easyRNASeq |
| Version: 2.19.2 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data easyRNASeq |
| StartedAt: 2019-04-08 19:42:49 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 19:44:33 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 103.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data easyRNASeq
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* checking for file ‘easyRNASeq/DESCRIPTION’ ... OK
* preparing ‘easyRNASeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘simpleRNASeq.Rmd’ using rmarkdown
Quitting from lines 21-26 (./Chapters/02-AnnotParam.Rmd)
Quitting from lines NA-40 (./Chapters/02-AnnotParam.Rmd)
Error: processing vignette 'simpleRNASeq.Rmd' failed with diagnostics:
Timeout was reached: Connection time-out
--- failed re-building ‘simpleRNASeq.Rmd’
--- re-building ‘easyRNASeq.Rnw’ using Sweave
--- finished re-building ‘easyRNASeq.Rnw’
/home/biocbuild/bbs-3.9-bioc/R/bin/R CMD Sweave easyRNASeq.Rnw
Output file: easyRNASeq.tex
/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e "tools::texi2pdf('easyRNASeq.tex')"
/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e "rmarkdown::render('simpleRNASeq.Rmd')"
processing file: simpleRNASeq.Rmd
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inline R code fragments
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label: style (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
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ordinary text without R code
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label: unnamed-chunk-1 (with options)
List of 4
$ message: logi FALSE
$ warning: logi FALSE
$ results: chr "hide"
$ echo : logi FALSE
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ordinary text without R code
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label: unnamed-chunk-2 (with options)
List of 1
$ child: chr "Chapters/01-Introduction.Rmd"
processing file: ./Chapters/01-Introduction.Rmd
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ordinary text without R code
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label: library
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ordinary text without R code
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ordinary text without R code
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label: unnamed-chunk-3 (with options)
List of 1
$ child: chr "Chapters/02-AnnotParam.Rmd"
processing file: ./Chapters/02-AnnotParam.Rmd
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ordinary text without R code
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label: P trichocarpa annotation
Quitting from lines 21-26 (./Chapters/02-AnnotParam.Rmd)
Quitting from lines NA-40 (./Chapters/02-AnnotParam.Rmd)
Error in curl_download(url = paste0("ftp://ftp.plantgenie.org/Data/PopGenIE/", :
Timeout was reached: Connection time-out
Calls: <Anonymous> ... withCallingHandlers -> withVisible -> eval -> eval -> curl_download
Execution halted
Makefile:14: recipe for target 'html' failed
make: *** [html] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted