Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:25:42 -0400 (Tue, 09 Apr 2019).
Package 334/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
contiBAIT 1.11.1 Kieran O'Neill
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: contiBAIT |
Version: 1.11.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/contiBAIT_1.11.1.tar.gz && rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=contiBAIT.buildbin-libdir contiBAIT_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL contiBAIT_1.11.1.zip && rm contiBAIT_1.11.1.tar.gz contiBAIT_1.11.1.zip |
StartedAt: 2019-04-08 20:15:48 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 20:18:45 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 176.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/contiBAIT_1.11.1.tar.gz && rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=contiBAIT.buildbin-libdir contiBAIT_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL contiBAIT_1.11.1.zip && rm contiBAIT_1.11.1.tar.gz contiBAIT_1.11.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3614k 100 3614k 0 0 30.2M 0 --:--:-- --:--:-- --:--:-- 32.0M install for i386 * installing *source* package 'contiBAIT' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c buildLinkageGroups.cpp -o buildLinkageGroups.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c computeSim.cpp -o computeSim.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c orderContigsGreedy.cpp -o orderContigsGreedy.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o contiBAIT.dll tmp.def buildLinkageGroups.o computeSim.o orderContigsGreedy.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/contiBAIT.buildbin-libdir/00LOCK-contiBAIT/00new/contiBAIT/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' ** help *** installing help indices converting help for package 'contiBAIT' finding HTML links ... done BAIT html ChrTable html ContigOrdering html LibraryGroupList html LinkageGroupList html StrandFreqMatrix html StrandReadMatrix html StrandStateList html StrandStateMatrix html barplotLinkageGroupCalls-LinkageGroupList-ChrTable-method html clusterContigs-StrandStateMatrix-method html contiBAIT html exampleChrTable html exampleContigOrder html exampleCrickFreq html exampleDividedChr html exampleLGList html exampleLibList html exampleReadCounts html exampleStrandFreq html exampleWCMatrix html exampleWatsonFreq html findSexGroups-LinkageGroupList-StrandStateMatrix-method html findSimilarLibraries html fixLinkageGroups html flipOrderedLinkageGroups html highlightAssemblyErrors html ideogramPlot-StrandReadMatrix-StrandReadMatrix-ChrTable-method html locateMisorients html makeBoxPlot html makeChrTable html mapGapFromOverlap html mergeFlankedLGs html orderAllLinkageGroups html orderContigsGreedy html orderContigsTSP html plotContigOrder html plotLGDistances-LinkageGroupList-StrandStateMatrix-method html plotWCdistribution-StrandFreqMatrix-method html preprocessStrandTable-StrandFreqMatrix-method html reorientAndMergeLGs html show-ContigOrdering-method html show-LibraryGroupList-method html show-LinkageGroupList-method html show-OrientationFrame-method html show-StrandFreqMatrix-method html show-StrandReadMatrix-method html show-StrandStateList-method html show-StrandStateMatrix-method html strandSeqFreqTable html thoroughBed html writeBed html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' ** testing if installed package can be loaded from final location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'contiBAIT' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c buildLinkageGroups.cpp -o buildLinkageGroups.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c computeSim.cpp -o computeSim.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c orderContigsGreedy.cpp -o orderContigsGreedy.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o contiBAIT.dll tmp.def buildLinkageGroups.o computeSim.o orderContigsGreedy.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/contiBAIT.buildbin-libdir/contiBAIT/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT' * MD5 sums packaged installation of 'contiBAIT' as contiBAIT_1.11.1.zip * DONE (contiBAIT) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'contiBAIT' successfully unpacked and MD5 sums checked