Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:42:44 -0400 (Tue, 09 Apr 2019).
Package 367/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cTRAP 1.1.3 Nuno Saraiva-Agostinho
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: cTRAP |
Version: 1.1.3 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cTRAP.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings cTRAP_1.1.3.tar.gz |
StartedAt: 2019-04-09 02:05:39 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 02:09:50 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 250.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cTRAP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cTRAP.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings cTRAP_1.1.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/cTRAP.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'cTRAP/DESCRIPTION' ... OK * this is package 'cTRAP' version '1.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cTRAP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed plotL1000comparison 8.30 0.34 8.95 downloadL1000data 8.04 0.41 10.70 downloadENCODEknockdownMetadata 3.06 0.40 11.91 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed plotL1000comparison 12.11 0.38 12.63 downloadL1000data 8.39 0.59 16.78 downloadENCODEknockdownMetadata 5.59 0.23 13.80 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cTRAP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cTRAP_1.1.3.tar.gz && rm -rf cTRAP.buildbin-libdir && mkdir cTRAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cTRAP.buildbin-libdir cTRAP_1.1.3.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cTRAP_1.1.3.zip && rm cTRAP_1.1.3.tar.gz cTRAP_1.1.3.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2532k 100 2532k 0 0 30.4M 0 --:--:-- --:--:-- --:--:-- 32.5M install for i386 * installing *source* package 'cTRAP' ... ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cTRAP' finding HTML links ... done ENCODEmetadata html ENCODEsamples html GCT-class html cTRAP html checkColnames html closeOpenHandles html compareAgainstL1000 html correlatePerCellLine html counts html diffExprStat html downloadENCODEknockdownMetadata html downloadENCODEsamples html downloadIfNeeded html downloadL1000data html filterL1000metadata html fix.datatypes html getENCODEcontrols html getL1000Conditions html getL1000PerturbationTypes html l1000metadata html l1000perturbationsKnockdown html l1000perturbationsSmallMolecules html loadENCODEsample html loadL1000perturbations html performDifferentialExpression html performGSAperCellLine html plotGSEA html plotL1000comparison html prepareENCODEgeneExpression html processIds html readGctxIds html readGctxMeta html subsetToIds html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cTRAP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cTRAP' as cTRAP_1.1.3.zip * DONE (cTRAP) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'cTRAP' successfully unpacked and MD5 sums checked
cTRAP.Rcheck/tests_i386/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(cTRAP) > > test_check("cTRAP") Comparing with cell line HepG2 Comparing with cell line HepG2 Performing GSA using perturbation signatures... Comparing with cell line HEPG2 Comparing with cell line HEPG2 Performing GSA using perturbation signatures... == testthat results =========================================================== OK: 25 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 23.71 0.96 24.98 |
cTRAP.Rcheck/tests_x64/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(cTRAP) > > test_check("cTRAP") Comparing with cell line HepG2 Comparing with cell line HepG2 Performing GSA using perturbation signatures... Comparing with cell line HEPG2 Comparing with cell line HEPG2 Performing GSA using perturbation signatures... == testthat results =========================================================== OK: 24 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 21.06 0.57 22.01 |
cTRAP.Rcheck/examples_i386/cTRAP-Ex.timings
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cTRAP.Rcheck/examples_x64/cTRAP-Ex.timings
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