Back to Multiple platform build/check report for BioC 3.9
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for cTRAP on celaya2

This page was generated on 2019-04-09 13:21:20 -0400 (Tue, 09 Apr 2019).

Package 367/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cTRAP 1.1.3
Nuno Saraiva-Agostinho
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/cTRAP
Branch: master
Last Commit: 4607f01
Last Changed Date: 2018-12-03 11:04:48 -0400 (Mon, 03 Dec 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: cTRAP
Version: 1.1.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP
StartedAt: 2019-04-08 23:20:43 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 23:22:37 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 113.3 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP
###
##############################################################################
##############################################################################


* checking for file ‘cTRAP/DESCRIPTION’ ... OK
* preparing ‘cTRAP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘comparing_DGE_with_perturbations.Rmd’ using rmarkdown
Quitting from lines 80-97 (comparing_DGE_with_perturbations.Rmd) 
Error: processing vignette 'comparing_DGE_with_perturbations.Rmd' failed with diagnostics:
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1. 
Please report this on the support site at http://support.bioconductor.org
--- failed re-building ‘comparing_DGE_with_perturbations.Rmd’

SUMMARY: processing the following file failed:
  ‘comparing_DGE_with_perturbations.Rmd’

Error: Vignette re-building failed.
Execution halted