Multiple platform build/check report for BioC 3.9 - BUILD report for apeglm on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data apeglm
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* checking for file ‘apeglm/DESCRIPTION’ ... OK
* preparing ‘apeglm’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/apevsdeseq_7a90c36b1ec4e09dfa76c202289d766b.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/apevsdeseq_7a90c36b1ec4e09dfa76c202289d766b.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/asemaplot_507b0736eee915cd9accd4b9296b0698.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/asemaplot_507b0736eee915cd9accd4b9296b0698.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/maplots_daff6738630bf2910326e359cc05dfea.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/maplots_daff6738630bf2910326e359cc05dfea.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/maplotthresh_51f9723e405021757495d3bf3d91a19d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/maplotthresh_51f9723e405021757495d3bf3d91a19d.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/mlemaplot_eaebdb5c3872e1c847f2add9b52e08ee.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/mlemaplot_eaebdb5c3872e1c847f2add9b52e08ee.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/pvalcomp2_74d8063a9007a999628c678656bb2367.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/pvalcomp2_74d8063a9007a999628c678656bb2367.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/pvalcomp_33286f47e36442d2d8ae9dd604ad3b6d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/pvalcomp_33286f47e36442d2d8ae9dd604ad3b6d.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-10_c3fe1bdf7fbd925f5ec9cbda8cd861a4.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-10_c3fe1bdf7fbd925f5ec9cbda8cd861a4.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-11_31aebc2fac57a9dffd07cec536a28230.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-11_31aebc2fac57a9dffd07cec536a28230.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-12_7133eb22e6e3d0a1915b54cd427058e0.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-12_7133eb22e6e3d0a1915b54cd427058e0.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-13_a6b15e0f3828b8a83808dc14ade1f5ca.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-13_a6b15e0f3828b8a83808dc14ade1f5ca.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-14_f2699c3dd73d02116c652f63af86d1b7.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-14_f2699c3dd73d02116c652f63af86d1b7.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-15_897fa485783e9288ed6a9b51795c326a.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-15_897fa485783e9288ed6a9b51795c326a.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-16_32e7276ecf8aa198ebc87aabc9e097b1.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-16_32e7276ecf8aa198ebc87aabc9e097b1.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-17_88d66c2ff4b4b9608f970011039cf1d4.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-17_88d66c2ff4b4b9608f970011039cf1d4.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-18_8e84077812dee2b9b96ff25efc7dac28.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-18_8e84077812dee2b9b96ff25efc7dac28.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-1_f0fe00664665c842fb045a2af463c56d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-1_f0fe00664665c842fb045a2af463c56d.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-2_163344211b59c3c7dc60ed88df6ba850.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-2_163344211b59c3c7dc60ed88df6ba850.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-3_e11bf62306dfef8f85e16c0d417ef3ea.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-3_e11bf62306dfef8f85e16c0d417ef3ea.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-4_98bfda5070aa40945ff9e39a0c3ac680.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-4_98bfda5070aa40945ff9e39a0c3ac680.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-5_999ae7fb8de094023ae0f58badb5015c.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-5_999ae7fb8de094023ae0f58badb5015c.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-6_bea3ebb9a4c1f3bc8719353c311cf9af.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-6_bea3ebb9a4c1f3bc8719353c311cf9af.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-7_01fbf263ac410471cc41b28c0a5ed27c.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-7_01fbf263ac410471cc41b28c0a5ed27c.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-8_c7e554514c8c8bbcf68c2412e58cea4a.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-8_c7e554514c8c8bbcf68c2412e58cea4a.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-9_73e633a1eb69839d961c99eaae954c9d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'apeglm/vignettes/apeglm_cache/html/unnamed-chunk-9_73e633a1eb69839d961c99eaae954c9d.rdx'
* building 'apeglm_1.5.4.tar.gz'
BUILD report for apeglm on celaya2

Summary

Command output
