Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:27:08 -0400 (Tue, 09 Apr 2019).
Package 43/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
alpine 1.9.0 Michael Love
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: alpine |
Version: 1.9.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:alpine.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings alpine_1.9.0.tar.gz |
StartedAt: 2019-04-09 01:03:31 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:12:15 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 523.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: alpine.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:alpine.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings alpine_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/alpine.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'alpine/DESCRIPTION' ... OK * this is package 'alpine' version '1.9.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'alpine' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: 'S4Vectors:::fancy_mseq' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed fitBiasModels 18.14 1.58 21.65 estimateAbundance 14.25 2.01 16.72 predictCoverage 8.97 0.88 10.12 getFragmentWidths 5.41 0.33 6.31 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed fitBiasModels 18.70 1.11 20.03 estimateAbundance 16.19 1.58 18.39 predictCoverage 9.63 0.75 10.58 getFragmentWidths 5.50 0.28 6.06 getReadLength 5.11 0.10 5.41 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/alpine.Rcheck/00check.log' for details.
alpine.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/alpine_1.9.0.tar.gz && rm -rf alpine.buildbin-libdir && mkdir alpine.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=alpine.buildbin-libdir alpine_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL alpine_1.9.0.zip && rm alpine_1.9.0.tar.gz alpine_1.9.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 193k 100 193k 0 0 3202k 0 --:--:-- --:--:-- --:--:-- 3579k install for i386 * installing *source* package 'alpine' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'alpine' finding HTML links ... done alpine-package html buildFragtypes html estimateAbundance html extractAlpine html fitBiasModels html getFragmentWidths html getReadLength html mergeGenes html normalizeDESeq html plotFragLen html plotGC html plotGRL html plotOrder0 html plotRelPos html predictCoverage html preprocessedData html splitGenesAcrossChroms html splitLongGenes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'alpine' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'alpine' as alpine_1.9.0.zip * DONE (alpine) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'alpine' successfully unpacked and MD5 sums checked
alpine.Rcheck/tests_i386/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(alpine) > test_check("alpine") == testthat results =========================================================== OK: 1 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 59.79 6.17 66.42 |
alpine.Rcheck/tests_x64/testthat.Rout R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(alpine) > test_check("alpine") == testthat results =========================================================== OK: 1 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 54.48 4.10 59.00 |
alpine.Rcheck/examples_i386/alpine-Ex.timings
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alpine.Rcheck/examples_x64/alpine-Ex.timings
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