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BUILD report for adductomicsR on malbec2

This page was generated on 2019-04-09 11:52:36 -0400 (Tue, 09 Apr 2019).

Package 18/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
adductomicsR 0.99.79
Josie Hayes
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/adductomicsR
Branch: master
Last Commit: d2755cc
Last Changed Date: 2019-01-28 15:26:50 -0400 (Mon, 28 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: adductomicsR
Version: 0.99.79
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data adductomicsR
StartedAt: 2019-04-08 22:25:32 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:26:10 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 38.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data adductomicsR
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* checking for file ‘adductomicsR/DESCRIPTION’ ... OK
* preparing ‘adductomicsR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘adductomicsRWorkflow.Rmd’ using rmarkdown
Quitting from lines 97-103 (adductomicsRWorkflow.Rmd) 
Error: processing vignette 'adductomicsRWorkflow.Rmd' failed with diagnostics:
directories containing .mzXML files are not level...e.g.



--- failed re-building ‘adductomicsRWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘adductomicsRWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted