Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:51:33 -0400 (Tue, 09 Apr 2019).
Package 19/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
adSplit 1.53.0 Claudio Lottaz
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: adSplit |
Version: 1.53.0 |
Command: rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh adSplit_1.53.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R adSplit.buildbin-libdir |
StartedAt: 2019-04-09 06:37:41 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 06:38:25 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 44.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: adSplit_1.53.0.tgz |
PackageFileSize: 355.5 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh adSplit_1.53.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R adSplit.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=adSplit.buildbin-libdir adSplit_1.53.0.tar.gz' >>>>>>> * installing *source* package ‘adSplit’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c adSplit.cpp -o adSplit.o adSplit.cpp:256:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] throw Tomato(__LINE__, "tscore: internal error, shame on the programmer"); ^ adSplit.cpp:469:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] throw Tomato(__LINE__, "isis() called with unknown function"); ^ 2 warnings generated. clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o adSplit.so adSplit.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/adSplit.buildbin-libdir/00LOCK-adSplit/00new/adSplit/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adSplit) >>>>>>> >>>>>>> FIXING LINKS FOR adSplit.buildbin-libdir/adSplit/libs//adSplit.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "adSplit.buildbin-libdir/adSplit/libs//adSplit.so"