Package: SwathXtend

Version: 2.5.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SwathXtend_2.5.0.tar.gz && rm -rf SwathXtend.buildbin-libdir && mkdir SwathXtend.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SwathXtend.buildbin-libdir SwathXtend_2.5.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SwathXtend_2.5.0.zip && rm SwathXtend_2.5.0.tar.gz SwathXtend_2.5.0.zip

StartedAt: 2019-04-08 19:03:41 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:06:49 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 188.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SwathXtend_2.5.0.tar.gz && rm -rf SwathXtend.buildbin-libdir && mkdir SwathXtend.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SwathXtend.buildbin-libdir SwathXtend_2.5.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SwathXtend_2.5.0.zip && rm SwathXtend_2.5.0.tar.gz SwathXtend_2.5.0.zip
###
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install for i386

* installing *source* package 'SwathXtend' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SwathXtend'
    finding HTML links ... done
    applyttest                              html  
    applyttestPep                           html  
    buildSpectraLibPair                     html  
    canonicalFormat                         html  
    checkQuality                            html  
    cleanLib                                html  
    coverage                                html  
    cv                                      html  
    fdr.crit                                html  
    getFdrBins                              html  
    ionCorGS                                html  
    medianNorm                              html  
    mlr                                     html  
    mlrGroup                                html  
    mlrrep                                  html  
    outputLib                               html  
    plotAll                                 html  
    plotDensities                           html  
    plotErrorBarsLines                      html  
    plotRIICor                              html  
    plotRTCor                               html  
    plotRTResd                              html  
    plotRelativeDensities                   html  
    quantification.accuracy                 html  
    readLibFile                             html  
    reliabilityCheckLibrary                 html  
    reliabilityCheckSwath                   html  
    swath.means                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SwathXtend' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SwathXtend' as SwathXtend_2.5.0.zip
* DONE (SwathXtend)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SwathXtend' successfully unpacked and MD5 sums checked