Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for Sconify on tokay2

This page was generated on 2019-04-09 12:37:21 -0400 (Tue, 09 Apr 2019).

Package 1445/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Sconify 1.3.1
Tyler J Burns
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/Sconify
Branch: master
Last Commit: 16ae07a
Last Changed Date: 2019-01-04 13:48:59 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: Sconify
Version: 1.3.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Sconify_1.3.1.tar.gz && rm -rf Sconify.buildbin-libdir && mkdir Sconify.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sconify.buildbin-libdir Sconify_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Sconify_1.3.1.zip && rm Sconify_1.3.1.tar.gz Sconify_1.3.1.zip
StartedAt: 2019-04-08 19:08:30 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:09:06 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 35.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Sconify_1.3.1.tar.gz && rm -rf Sconify.buildbin-libdir && mkdir Sconify.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sconify.buildbin-libdir Sconify_1.3.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Sconify_1.3.1.zip && rm Sconify_1.3.1.tar.gz Sconify_1.3.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3903k  100 3903k    0     0  6416k      0 --:--:-- --:--:-- --:--:-- 6494k

install for i386

* installing *source* package 'Sconify' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'flowCore::view' by 'tibble::view' when loading 'Sconify'
Note: wrong number of arguments to '/' 
Note: wrong number of arguments to 'asinh' 
** help
*** installing help indices
  converting help for package 'Sconify'
    finding HTML links ... done
    AddTsne                                 html  
    FcsToTibble                             html  
    Fnn                                     html  
    GetKnnDe                                html  
    GetMarkerNames                          html  
    Impute                                  html  
    ImputeTesting                           html  
    LogTransformQ                           html  
    MakeHist                                html  
    MakeKnnList                             html  
    MeaningOfLife                           html  
    MultipleDonorStatistics                 html  
    ParseMarkers                            html  
    PostProcessing                          html  
    ProcessMultipleFiles                    html  
    QCorrectionThresholding                 html  
    QuantNormalize                          html  
    QuantNormalizeElements                  html  
    RunStatistics                           html  
    SconeValues                             html  
    SplitFile                               html  
    StringToNumbers                         html  
    SubsampleAndTsne                        html  
    TsneVis                                 html  
    bz.gmcsf.final                          html  
    bz.gmcsf.final.norm.scale               html  
    exist                                   html  
    funct.markers                           html  
    input.markers                           html  
    markers                                 html  
    wand.combined                           html  
    wand.final                              html  
    wand.ideal.k                            html  
    wand.il7                                html  
    wand.scone                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'flowCore::view' by 'tibble::view' when loading 'Sconify'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'flowCore::view' by 'tibble::view' when loading 'Sconify'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Sconify' ...
** testing if installed package can be loaded
Warning: replacing previous import 'flowCore::view' by 'tibble::view' when loading 'Sconify'
* MD5 sums
packaged installation of 'Sconify' as Sconify_1.3.1.zip
* DONE (Sconify)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Sconify' successfully unpacked and MD5 sums checked