Package: SPONGE

Version: 1.5.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SPONGE_1.5.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.5.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.5.0.zip && rm SPONGE_1.5.0.tar.gz SPONGE_1.5.0.zip

StartedAt: 2019-04-08 20:41:07 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:41:55 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 47.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SPONGE_1.5.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.5.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.5.0.zip && rm SPONGE_1.5.0.tar.gz SPONGE_1.5.0.zip
###
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install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'SPONGE' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SPONGE'
    finding HTML links ... done
    ceRNA_interactions                      html  
    check_and_convert_expression_data       html  
    fn_elasticnet                           html  
    fn_gene_miRNA_F_test                    html  
    fn_get_model_coef                       html  
    fn_get_rss                              html  
    fn_get_shared_miRNAs                    html  
    gene_expr                               html  
    genes_pairwise_combinations             html  
    mir_expr                                html  
    mir_interactions                        html  
    mircode_ensg                            html  
    mircode_symbol                          html  
    precomputed_cov_matrices                html  
    precomputed_null_model                  html  
    sample_zero_mscor_cov                   html  
    sample_zero_mscor_data                  html  
    sponge                                  html  
    sponge_build_null_model                 html  
    sponge_compute_p_values                 html  
    sponge_edge_centralities                html  
    sponge_gene_miRNA_interaction_filter    html  
    sponge_network                          html  
    sponge_node_centralities                html  
    sponge_plot_network                     html  
    sponge_plot_network_centralities        html  
    sponge_plot_simulation_results          html  
    sponge_run_benchmark                    html  
    sponge_subsampling                      html  
    targetscan_ensg                         html  
    targetscan_symbol                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'SPONGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SPONGE' as SPONGE_1.5.0.zip
* DONE (SPONGE)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SPONGE' successfully unpacked and MD5 sums checked