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CHECK report for RedeR on celaya2

This page was generated on 2019-04-09 13:01:29 -0400 (Tue, 09 Apr 2019).

Package 1321/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 1.31.0
Mauro Castro
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/RedeR
Branch: master
Last Commit: 3da4386
Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: RedeR
Version: 1.31.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.31.0.tar.gz
StartedAt: 2019-04-09 04:52:00 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 04:53:03 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 63.6 seconds
RetCode: 0
Status:  OK 
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.31.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck/00check.log’
for details.



Installation output

RedeR.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output


Example timings

RedeR.Rcheck/RedeR-Ex.timings

nameusersystemelapsed
RedPort-class0.0040.0010.005
RedPort0.0010.0000.001
RedeR.data0.5330.0550.588
addEdgeBetweenContainers0.0250.0040.029
addEdges0.0170.0020.019
addGraph0.0100.0020.012
addLegend0.0100.0010.012
addNodes0.0100.0010.011
addSeries0.0090.0010.010
addSubgraph0.0100.0010.010
addSubgraph.list0.0100.0010.010
att0.0280.0030.031
calld0.0000.0000.001
cea0.0120.0020.013
deSelectEdges0.0090.0010.010
deSelectGraph0.0150.0010.015
deSelectNodes0.0090.0010.010
deleteEdges0.0140.0010.014
deleteNodes0.0160.0010.018
deleteSelectedEdges0.0170.0020.019
deleteSelectedNodes0.0170.0020.019
duplicateGraph0.0100.0010.012
exitd0.0010.0000.001
getContainerComponets0.0110.0010.011
getEdgeIDs0.0120.0010.013
getEdges0.0110.0020.012
getGraph0.0130.0020.015
getNodeIDs0.0140.0010.016
getNodes0.0100.0010.011
getSourceEdgeIDs0.0140.0020.016
getTargetEdgeIDs0.0140.0010.016
gtoy.rm0.0010.0000.001
isDynamicsActive0.0010.0000.001
mergeNodes0.0190.0010.021
mergeOutEdges0.0130.0010.014
nestNodes0.0170.0010.018
nesthc1.7260.1641.890
ping0.0010.0000.002
relax0.0120.0030.014
resetd0.0010.0000.001
selectAllEdges0.0110.0020.014
selectAllNodes0.0110.0020.013
selectEdges0.0110.0020.014
selectGraph0.0110.0030.014
selectNodes0.0170.0030.020
setArrowDirection0.0210.0030.024
subg0.0670.0130.080
updateContainerSize0.0190.0030.021
updateGraph0.0170.0030.020
version0.0010.0000.002