Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:39:30 -0400 (Tue, 09 Apr 2019).
Package 1414/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RUVnormalize 1.17.0 Laurent Jacob
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: RUVnormalize |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:RUVnormalize.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings RUVnormalize_1.17.0.tar.gz |
StartedAt: 2019-04-09 03:25:18 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 03:25:58 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 40.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RUVnormalize.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:RUVnormalize.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings RUVnormalize_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/RUVnormalize.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RUVnormalize/DESCRIPTION’ ... OK * this is package ‘RUVnormalize’ version ‘1.17.0’ * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘spams’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RUVnormalize’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘spams’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE iterativeRUV: no visible global function definition for ‘kmeans’ myPalette: no visible global function definition for ‘col2rgb’ myPalette: no visible global function definition for ‘rgb’ svdPlot: no visible global function definition for ‘pdf’ svdPlot: no visible global function definition for ‘par’ svdPlot: no visible global function definition for ‘plot’ svdPlot: no visible global function definition for ‘points’ svdPlot: no visible global function definition for ‘text’ svdPlot: no visible global function definition for ‘dev.off’ Undefined global functions or variables: col2rgb dev.off kmeans par pdf plot points rgb text Consider adding importFrom("grDevices", "col2rgb", "dev.off", "pdf", "rgb") importFrom("graphics", "par", "plot", "points", "text") importFrom("stats", "kmeans") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/RUVnormalize.Rcheck/00check.log’ for details.
RUVnormalize.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL RUVnormalize ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘RUVnormalize’ ... ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RUVnormalize)
RUVnormalize.Rcheck/RUVnormalize-Ex.timings
name | user | system | elapsed | |
clScore | 3.405 | 0.072 | 3.523 | |
iterativeRUV | 0.121 | 0.000 | 0.120 | |
naiveRandRUV | 3.725 | 0.044 | 3.769 | |
naiveReplicateRUV | 2.639 | 0.008 | 2.648 | |
svdPlot | 2.908 | 0.004 | 2.912 | |