Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:18:29 -0400 (Tue, 09 Apr 2019).
Package 1406/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RTNsurvival 1.7.4 Clarice Groeneveld
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: RTNsurvival |
Version: 1.7.4 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNsurvival_1.7.4.tar.gz |
StartedAt: 2019-04-09 05:11:19 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 05:16:10 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 290.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RTNsurvival.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNsurvival_1.7.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RTNsurvival.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RTNsurvival/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RTNsurvival’ version ‘1.7.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RTNsurvival’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed tnsPlotGSEA2-methods 6.702 0.846 7.551 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RTNsurvival.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RTNsurvival ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘RTNsurvival’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTNsurvival)
RTNsurvival.Rcheck/tests/runTests.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("RTNsurvival") RUNIT TEST PROTOCOL -- Tue Apr 9 05:15:56 2019 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : RTNsurvival RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 12.883 1.308 14.497
RTNsurvival.Rcheck/RTNsurvival-Ex.timings
name | user | system | elapsed | |
TNS.data | 0.005 | 0.003 | 0.006 | |
tni2tnsPreprocess-methods | 0.374 | 0.029 | 0.402 | |
tnsAREA3-methods | 1.784 | 0.124 | 1.909 | |
tnsCox-methods | 1.558 | 0.325 | 1.882 | |
tnsCoxInteraction-methods | 1.283 | 0.253 | 1.536 | |
tnsGSEA2-methods | 1.640 | 0.295 | 1.935 | |
tnsGet-methods | 1.726 | 0.257 | 1.983 | |
tnsInteraction-methods | 1.199 | 0.228 | 1.427 | |
tnsKM-methods | 1.222 | 0.189 | 1.410 | |
tnsKmInteraction-methods | 1.557 | 0.249 | 1.807 | |
tnsPlotCovariates-methods | 3.926 | 0.295 | 4.222 | |
tnsPlotCox-methods | 1.198 | 0.213 | 1.413 | |
tnsPlotCoxInteraction-methods | 1.192 | 0.221 | 1.414 | |
tnsPlotGSEA2-methods | 6.702 | 0.846 | 7.551 | |
tnsPlotKM-methods | 1.968 | 0.417 | 2.387 | |
tnsPlotKmInteraction-methods | 1.301 | 0.298 | 1.600 | |
tnsPlotSRE-methods | 1.517 | 0.548 | 1.542 | |
tnsSRD-methods | 1.736 | 0.669 | 1.761 | |
tnsSRE-methods | 1.931 | 0.777 | 1.719 | |
tnsStratification | 0.001 | 0.001 | 0.001 | |