RJMCMCNucleosomes.Rcheck/tests_i386/runTests.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## Run all tests presnt in the package
> BiocGenerics:::testPackage("RJMCMCNucleosomes")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
RJMCMCNucleosomes - Predicted nucleosomes
Call:
rjmcmc(reads = reads_demo_02, seqName = "chr_SYNTHETIC", nbrIterations = 1e+05,
kMax = 30, lambda = 2, minInterval = 146, maxInterval = 490,
minReads = 3, vSeed = 32)
Number of nucleosomes:
[1] 6
Nucleosomes positions:
GRanges object with 6 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 10072 *
[2] chr_SYNTHETIC 10241 *
[3] chr_SYNTHETIC 10574 *
[4] chr_SYNTHETIC 10656 *
[5] chr_SYNTHETIC 10669 *
[6] chr_SYNTHETIC 10744 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
[1] "Doing: out/results/rjmcmc_seg_1.rds"
[1] "Done: out/results/rjmcmc_seg_1.rds"
[1] "Doing: out/results/rjmcmc_seg_2.rds"
[1] "Done: out/results/rjmcmc_seg_2.rds"
[1] "Doing: out/results/rjmcmc_seg_3.rds"
[1] "Done: out/results/rjmcmc_seg_3.rds"
[1] "Doing: out/results/rjmcmc_seg_4.rds"
[1] "Done: out/results/rjmcmc_seg_4.rds"
[1] "Doing: out/results/rjmcmc_seg_5.rds"
[1] "Done: out/results/rjmcmc_seg_5.rds"
[1] "Doing: out/results/rjmcmc_seg_6.rds"
[1] "Done: out/results/rjmcmc_seg_6.rds"
[1] "Doing: out/results/rjmcmc_seg_7.rds"
[1] "Done: out/results/rjmcmc_seg_7.rds"
[1] "Doing: out/results/rjmcmc_seg_8.rds"
[1] "Done: out/results/rjmcmc_seg_8.rds"
[1] "Doing: out/results/rjmcmc_seg_9.rds"
[1] "Done: out/results/rjmcmc_seg_9.rds"
[1] "Doing: out/results/rjmcmc_seg_10.rds"
[1] "Done: out/results/rjmcmc_seg_10.rds"
[1] "Doing: out/results/rjmcmc_seg_11.rds"
[1] "Done: out/results/rjmcmc_seg_11.rds"
[1] "Doing: out/results/rjmcmc_seg_12.rds"
[1] "Done: out/results/rjmcmc_seg_12.rds"
[1] "Doing: out/results/rjmcmc_seg_13.rds"
[1] "Done: out/results/rjmcmc_seg_13.rds"
[1] "Doing: out/results/rjmcmc_seg_14.rds"
[1] "Done: out/results/rjmcmc_seg_14.rds"
[1] "Doing: out/results/rjmcmc_seg_15.rds"
[1] "Done: out/results/rjmcmc_seg_15.rds"
[1] "Doing: out/results/rjmcmc_seg_16.rds"
[1] "Done: out/results/rjmcmc_seg_16.rds"
[1] "Doing: out/results/rjmcmc_seg_17.rds"
[1] "Done: out/results/rjmcmc_seg_17.rds"
[1] "Doing: out/results/rjmcmc_seg_18.rds"
[1] "Done: out/results/rjmcmc_seg_18.rds"
[1] "Doing: out/results/rjmcmc_seg_19.rds"
[1] "Done: out/results/rjmcmc_seg_19.rds"
[1] "Doing: out/results/rjmcmc_seg_20.rds"
[1] "Done: out/results/rjmcmc_seg_20.rds"
[1] "Doing: out/results/rjmcmc_seg_21.rds"
[1] "Done: out/results/rjmcmc_seg_21.rds"
[1] "Doing: out/results/rjmcmc_seg_22.rds"
[1] "Done: out/results/rjmcmc_seg_22.rds"
[1] "Doing: out/results/rjmcmc_seg_23.rds"
[1] "Done: out/results/rjmcmc_seg_23.rds"
[1] "Doing: out/results/rjmcmc_seg_24.rds"
[1] "Done: out/results/rjmcmc_seg_24.rds"
[1] "Doing: out/results/rjmcmc_seg_25.rds"
[1] "Done: out/results/rjmcmc_seg_25.rds"
[1] "Doing: out/results/rjmcmc_seg_26.rds"
[1] "Done: out/results/rjmcmc_seg_26.rds"
[1] "Doing: out/results/rjmcmc_seg_27.rds"
[1] "Done: out/results/rjmcmc_seg_27.rds"
[1] "Doing: out/results/rjmcmc_seg_28.rds"
[1] "Done: out/results/rjmcmc_seg_28.rds"
[1] "Doing: out/results/rjmcmc_seg_29.rds"
[1] "Done: out/results/rjmcmc_seg_29.rds"
[1] "Doing: out/results/rjmcmc_seg_30.rds"
[1] "Done: out/results/rjmcmc_seg_30.rds"
[1] "Doing: out/results/rjmcmc_seg_31.rds"
[1] "Done: out/results/rjmcmc_seg_31.rds"
[1] "Doing: out/results/rjmcmc_seg_32.rds"
[1] "Done: out/results/rjmcmc_seg_32.rds"
[1] "Doing: out/results/rjmcmc_seg_33.rds"
[1] "Done: out/results/rjmcmc_seg_33.rds"
[1] "Doing: out/results/rjmcmc_seg_34.rds"
[1] "Done: out/results/rjmcmc_seg_34.rds"
[1] "Doing: out/results/rjmcmc_seg_35.rds"
[1] "Done: out/results/rjmcmc_seg_35.rds"
[1] "Doing: out/results/rjmcmc_seg_36.rds"
[1] "Done: out/results/rjmcmc_seg_36.rds"
[1] "Doing: out/results/rjmcmc_seg_37.rds"
[1] "Done: out/results/rjmcmc_seg_37.rds"
[1] "Doing: out/results/rjmcmc_seg_38.rds"
[1] "Done: out/results/rjmcmc_seg_38.rds"
[1] "Doing: out/results/rjmcmc_seg_39.rds"
[1] "Done: out/results/rjmcmc_seg_39.rds"
[1] "Doing: out/results/rjmcmc_seg_40.rds"
[1] "Done: out/results/rjmcmc_seg_40.rds"
[1] "Doing: out/results/rjmcmc_seg_41.rds"
[1] "Done: out/results/rjmcmc_seg_41.rds"
[1] "Doing: out/results/rjmcmc_seg_42.rds"
[1] "Done: out/results/rjmcmc_seg_42.rds"
[1] "Doing: out/results/rjmcmc_seg_43.rds"
[1] "Done: out/results/rjmcmc_seg_43.rds"
[1] "Doing: out/results/rjmcmc_seg_44.rds"
[1] "Done: out/results/rjmcmc_seg_44.rds"
[1] "Doing: out/results/rjmcmc_seg_45.rds"
[1] "Done: out/results/rjmcmc_seg_45.rds"
[1] "Doing: out/results/rjmcmc_seg_46.rds"
[1] "Done: out/results/rjmcmc_seg_46.rds"
[1] "Doing: out/results/rjmcmc_seg_47.rds"
[1] "Done: out/results/rjmcmc_seg_47.rds"
[1] "Doing: out/results/rjmcmc_seg_48.rds"
[1] "Done: out/results/rjmcmc_seg_48.rds"
[1] "Doing: out/results/rjmcmc_seg_49.rds"
[1] "Done: out/results/rjmcmc_seg_49.rds"
[1] "Doing: out/results/rjmcmc_seg_50.rds"
[1] "Done: out/results/rjmcmc_seg_50.rds"
[1] "Doing: out/results/rjmcmc_seg_51.rds"
[1] "Done: out/results/rjmcmc_seg_51.rds"
[1] "Doing: out/results/rjmcmc_seg_52.rds"
[1] "Done: out/results/rjmcmc_seg_52.rds"
[1] "Doing: out/results/rjmcmc_seg_53.rds"
[1] "Done: out/results/rjmcmc_seg_53.rds"
[1] "Doing: out/results/rjmcmc_seg_54.rds"
[1] "Done: out/results/rjmcmc_seg_54.rds"
[1] "Doing: out/results/rjmcmc_seg_55.rds"
[1] "Done: out/results/rjmcmc_seg_55.rds"
[1] "Doing: out/results/rjmcmc_seg_56.rds"
[1] "Done: out/results/rjmcmc_seg_56.rds"
RJMCMCNucleosomes - Predicted nucleosomes Before and After Post-Treatment
BEFORE POST-TREATMENT
Number of nucleosomes:
[1] 102
Nucleosomes positions:
GRanges object with 102 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 1255 *
[2] chr_SYNTHETIC 2259 *
[3] chr_SYNTHETIC 3623 *
[4] chr_SYNTHETIC 4259 *
[5] chr_SYNTHETIC 5348 *
... ... ... ...
[98] chr_SYNTHETIC 53427 *
[99] chr_SYNTHETIC 54220 *
[100] chr_SYNTHETIC 54771 *
[101] chr_SYNTHETIC 55358 *
[102] chr_SYNTHETIC 55936 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
AFTER POST-TREATMENT
Number of nucleosomes:
[1] 89
Nucleosomes positions:
GRanges object with 89 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 1255 *
[2] chr_SYNTHETIC 2259 *
[3] chr_SYNTHETIC 3623 *
[4] chr_SYNTHETIC 4259 *
[5] chr_SYNTHETIC 5348 *
... ... ... ...
[85] chr_SYNTHETIC 53286 *
[86] chr_SYNTHETIC 54220 *
[87] chr_SYNTHETIC 54771 *
[88] chr_SYNTHETIC 55358 *
[89] chr_SYNTHETIC 55936 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
RJMCMCNucleosomes - Predicted nucleosomes
Number of nucleosomes:
[1] 11
Nucleosomes positions:
GRanges object with 11 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 10077 *
[2] chr_SYNTHETIC 10236 *
[3] chr_SYNTHETIC 10406 *
[4] chr_SYNTHETIC 10571 *
[5] chr_SYNTHETIC 10744 *
[6] chr_SYNTHETIC 10842 *
[7] chr_SYNTHETIC 10846 *
[8] chr_SYNTHETIC 10896 *
[9] chr_SYNTHETIC 10906 *
[10] chr_SYNTHETIC 11410 *
[11] chr_SYNTHETIC 11580 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
[1] "Doing: test_rjmcmcCHR_good_01/results/rjmcmc_seg_1.rds"
[1] "Done: test_rjmcmcCHR_good_01/results/rjmcmc_seg_1.rds"
[1] "Doing: test_rjmcmcCHR_good_01/results/rjmcmc_seg_2.rds"
[1] "Done: test_rjmcmcCHR_good_01/results/rjmcmc_seg_2.rds"
[1] "Doing: test_rjmcmcCHR_good_02/results/rjmcmc_seg_1.rds"
[1] "Done: test_rjmcmcCHR_good_02/results/rjmcmc_seg_1.rds"
RUNIT TEST PROTOCOL -- Tue Apr 09 05:38:12 2019
***********************************************
Number of test functions: 86
Number of errors: 0
Number of failures: 0
1 Test Suite :
RJMCMCNucleosomes RUnit Tests - 86 test functions, 0 errors, 0 failures
Number of test functions: 86
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
17.09 1.23 36.36
|
RJMCMCNucleosomes.Rcheck/tests_x64/runTests.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## Run all tests presnt in the package
> BiocGenerics:::testPackage("RJMCMCNucleosomes")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
RJMCMCNucleosomes - Predicted nucleosomes
Call:
rjmcmc(reads = reads_demo_02, seqName = "chr_SYNTHETIC", nbrIterations = 1e+05,
kMax = 30, lambda = 2, minInterval = 146, maxInterval = 490,
minReads = 3, vSeed = 32)
Number of nucleosomes:
[1] 6
Nucleosomes positions:
GRanges object with 6 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 10072 *
[2] chr_SYNTHETIC 10241 *
[3] chr_SYNTHETIC 10574 *
[4] chr_SYNTHETIC 10656 *
[5] chr_SYNTHETIC 10669 *
[6] chr_SYNTHETIC 10744 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
[1] "Doing: out/results/rjmcmc_seg_1.rds"
[1] "Done: out/results/rjmcmc_seg_1.rds"
[1] "Doing: out/results/rjmcmc_seg_2.rds"
[1] "Done: out/results/rjmcmc_seg_2.rds"
[1] "Doing: out/results/rjmcmc_seg_3.rds"
[1] "Done: out/results/rjmcmc_seg_3.rds"
[1] "Doing: out/results/rjmcmc_seg_4.rds"
[1] "Done: out/results/rjmcmc_seg_4.rds"
[1] "Doing: out/results/rjmcmc_seg_5.rds"
[1] "Done: out/results/rjmcmc_seg_5.rds"
[1] "Doing: out/results/rjmcmc_seg_6.rds"
[1] "Done: out/results/rjmcmc_seg_6.rds"
[1] "Doing: out/results/rjmcmc_seg_7.rds"
[1] "Done: out/results/rjmcmc_seg_7.rds"
[1] "Doing: out/results/rjmcmc_seg_8.rds"
[1] "Done: out/results/rjmcmc_seg_8.rds"
[1] "Doing: out/results/rjmcmc_seg_9.rds"
[1] "Done: out/results/rjmcmc_seg_9.rds"
[1] "Doing: out/results/rjmcmc_seg_10.rds"
[1] "Done: out/results/rjmcmc_seg_10.rds"
[1] "Doing: out/results/rjmcmc_seg_11.rds"
[1] "Done: out/results/rjmcmc_seg_11.rds"
[1] "Doing: out/results/rjmcmc_seg_12.rds"
[1] "Done: out/results/rjmcmc_seg_12.rds"
[1] "Doing: out/results/rjmcmc_seg_13.rds"
[1] "Done: out/results/rjmcmc_seg_13.rds"
[1] "Doing: out/results/rjmcmc_seg_14.rds"
[1] "Done: out/results/rjmcmc_seg_14.rds"
[1] "Doing: out/results/rjmcmc_seg_15.rds"
[1] "Done: out/results/rjmcmc_seg_15.rds"
[1] "Doing: out/results/rjmcmc_seg_16.rds"
[1] "Done: out/results/rjmcmc_seg_16.rds"
[1] "Doing: out/results/rjmcmc_seg_17.rds"
[1] "Done: out/results/rjmcmc_seg_17.rds"
[1] "Doing: out/results/rjmcmc_seg_18.rds"
[1] "Done: out/results/rjmcmc_seg_18.rds"
[1] "Doing: out/results/rjmcmc_seg_19.rds"
[1] "Done: out/results/rjmcmc_seg_19.rds"
[1] "Doing: out/results/rjmcmc_seg_20.rds"
[1] "Done: out/results/rjmcmc_seg_20.rds"
[1] "Doing: out/results/rjmcmc_seg_21.rds"
[1] "Done: out/results/rjmcmc_seg_21.rds"
[1] "Doing: out/results/rjmcmc_seg_22.rds"
[1] "Done: out/results/rjmcmc_seg_22.rds"
[1] "Doing: out/results/rjmcmc_seg_23.rds"
[1] "Done: out/results/rjmcmc_seg_23.rds"
[1] "Doing: out/results/rjmcmc_seg_24.rds"
[1] "Done: out/results/rjmcmc_seg_24.rds"
[1] "Doing: out/results/rjmcmc_seg_25.rds"
[1] "Done: out/results/rjmcmc_seg_25.rds"
[1] "Doing: out/results/rjmcmc_seg_26.rds"
[1] "Done: out/results/rjmcmc_seg_26.rds"
[1] "Doing: out/results/rjmcmc_seg_27.rds"
[1] "Done: out/results/rjmcmc_seg_27.rds"
[1] "Doing: out/results/rjmcmc_seg_28.rds"
[1] "Done: out/results/rjmcmc_seg_28.rds"
[1] "Doing: out/results/rjmcmc_seg_29.rds"
[1] "Done: out/results/rjmcmc_seg_29.rds"
[1] "Doing: out/results/rjmcmc_seg_30.rds"
[1] "Done: out/results/rjmcmc_seg_30.rds"
[1] "Doing: out/results/rjmcmc_seg_31.rds"
[1] "Done: out/results/rjmcmc_seg_31.rds"
[1] "Doing: out/results/rjmcmc_seg_32.rds"
[1] "Done: out/results/rjmcmc_seg_32.rds"
[1] "Doing: out/results/rjmcmc_seg_33.rds"
[1] "Done: out/results/rjmcmc_seg_33.rds"
[1] "Doing: out/results/rjmcmc_seg_34.rds"
[1] "Done: out/results/rjmcmc_seg_34.rds"
[1] "Doing: out/results/rjmcmc_seg_35.rds"
[1] "Done: out/results/rjmcmc_seg_35.rds"
[1] "Doing: out/results/rjmcmc_seg_36.rds"
[1] "Done: out/results/rjmcmc_seg_36.rds"
[1] "Doing: out/results/rjmcmc_seg_37.rds"
[1] "Done: out/results/rjmcmc_seg_37.rds"
[1] "Doing: out/results/rjmcmc_seg_38.rds"
[1] "Done: out/results/rjmcmc_seg_38.rds"
[1] "Doing: out/results/rjmcmc_seg_39.rds"
[1] "Done: out/results/rjmcmc_seg_39.rds"
[1] "Doing: out/results/rjmcmc_seg_40.rds"
[1] "Done: out/results/rjmcmc_seg_40.rds"
[1] "Doing: out/results/rjmcmc_seg_41.rds"
[1] "Done: out/results/rjmcmc_seg_41.rds"
[1] "Doing: out/results/rjmcmc_seg_42.rds"
[1] "Done: out/results/rjmcmc_seg_42.rds"
[1] "Doing: out/results/rjmcmc_seg_43.rds"
[1] "Done: out/results/rjmcmc_seg_43.rds"
[1] "Doing: out/results/rjmcmc_seg_44.rds"
[1] "Done: out/results/rjmcmc_seg_44.rds"
[1] "Doing: out/results/rjmcmc_seg_45.rds"
[1] "Done: out/results/rjmcmc_seg_45.rds"
[1] "Doing: out/results/rjmcmc_seg_46.rds"
[1] "Done: out/results/rjmcmc_seg_46.rds"
[1] "Doing: out/results/rjmcmc_seg_47.rds"
[1] "Done: out/results/rjmcmc_seg_47.rds"
[1] "Doing: out/results/rjmcmc_seg_48.rds"
[1] "Done: out/results/rjmcmc_seg_48.rds"
[1] "Doing: out/results/rjmcmc_seg_49.rds"
[1] "Done: out/results/rjmcmc_seg_49.rds"
[1] "Doing: out/results/rjmcmc_seg_50.rds"
[1] "Done: out/results/rjmcmc_seg_50.rds"
[1] "Doing: out/results/rjmcmc_seg_51.rds"
[1] "Done: out/results/rjmcmc_seg_51.rds"
[1] "Doing: out/results/rjmcmc_seg_52.rds"
[1] "Done: out/results/rjmcmc_seg_52.rds"
[1] "Doing: out/results/rjmcmc_seg_53.rds"
[1] "Done: out/results/rjmcmc_seg_53.rds"
[1] "Doing: out/results/rjmcmc_seg_54.rds"
[1] "Done: out/results/rjmcmc_seg_54.rds"
[1] "Doing: out/results/rjmcmc_seg_55.rds"
[1] "Done: out/results/rjmcmc_seg_55.rds"
[1] "Doing: out/results/rjmcmc_seg_56.rds"
[1] "Done: out/results/rjmcmc_seg_56.rds"
RJMCMCNucleosomes - Predicted nucleosomes Before and After Post-Treatment
BEFORE POST-TREATMENT
Number of nucleosomes:
[1] 102
Nucleosomes positions:
GRanges object with 102 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 1255 *
[2] chr_SYNTHETIC 2259 *
[3] chr_SYNTHETIC 3623 *
[4] chr_SYNTHETIC 4259 *
[5] chr_SYNTHETIC 5348 *
... ... ... ...
[98] chr_SYNTHETIC 53427 *
[99] chr_SYNTHETIC 54220 *
[100] chr_SYNTHETIC 54771 *
[101] chr_SYNTHETIC 55358 *
[102] chr_SYNTHETIC 55936 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
AFTER POST-TREATMENT
Number of nucleosomes:
[1] 89
Nucleosomes positions:
GRanges object with 89 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 1255 *
[2] chr_SYNTHETIC 2259 *
[3] chr_SYNTHETIC 3623 *
[4] chr_SYNTHETIC 4259 *
[5] chr_SYNTHETIC 5348 *
... ... ... ...
[85] chr_SYNTHETIC 53286 *
[86] chr_SYNTHETIC 54220 *
[87] chr_SYNTHETIC 54771 *
[88] chr_SYNTHETIC 55358 *
[89] chr_SYNTHETIC 55936 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
RJMCMCNucleosomes - Predicted nucleosomes
Number of nucleosomes:
[1] 11
Nucleosomes positions:
GRanges object with 11 ranges and 0 metadata columns:
seqnames ranges strand
<Rle> <IRanges> <Rle>
[1] chr_SYNTHETIC 10077 *
[2] chr_SYNTHETIC 10236 *
[3] chr_SYNTHETIC 10406 *
[4] chr_SYNTHETIC 10571 *
[5] chr_SYNTHETIC 10744 *
[6] chr_SYNTHETIC 10842 *
[7] chr_SYNTHETIC 10846 *
[8] chr_SYNTHETIC 10896 *
[9] chr_SYNTHETIC 10906 *
[10] chr_SYNTHETIC 11410 *
[11] chr_SYNTHETIC 11580 *
-------
seqinfo: 1 sequence from an unspecified genome; no seqlengths
[1] "Doing: test_rjmcmcCHR_good_01/results/rjmcmc_seg_1.rds"
[1] "Done: test_rjmcmcCHR_good_01/results/rjmcmc_seg_1.rds"
[1] "Doing: test_rjmcmcCHR_good_01/results/rjmcmc_seg_2.rds"
[1] "Done: test_rjmcmcCHR_good_01/results/rjmcmc_seg_2.rds"
[1] "Doing: test_rjmcmcCHR_good_02/results/rjmcmc_seg_1.rds"
[1] "Done: test_rjmcmcCHR_good_02/results/rjmcmc_seg_1.rds"
RUNIT TEST PROTOCOL -- Tue Apr 09 05:38:52 2019
***********************************************
Number of test functions: 86
Number of errors: 0
Number of failures: 0
1 Test Suite :
RJMCMCNucleosomes RUnit Tests - 86 test functions, 0 errors, 0 failures
Number of test functions: 86
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
20.12 0.54 38.48
|