Package: PepsNMR

Version: 1.1.3

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PepsNMR_1.1.3.tar.gz

StartedAt: 2019-04-09 02:38:53 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 02:50:06 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 673.4 seconds

RetCode: 0

Status:  OK

CheckDir: PepsNMR.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PepsNMR_1.1.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/PepsNMR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.1.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
PreprocessingChain 300.827  0.584 301.636
PEPSNMR-package    291.009  1.623 293.120
Warping             13.035  0.112  13.151
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL PepsNMR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘PepsNMR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PepsNMR)

name	user	system	elapsed
Apodization	0.754	0.052	1.061
BaselineCorrection	0.605	0.012	0.616
Bucketing	0.108	0.003	0.110
Draw	1.866	0.004	1.890
DrawPCA	0.87	0.00	0.87
DrawSignal	0.674	0.000	0.674
FirstOrderPhaseCorrection	0.025	0.012	0.038
FourierTransform	0.014	0.012	0.026
GroupDelayCorrection	0.042	0.000	0.042
InternalReferencing	0.017	0.008	0.024
NegativeValuesZeroing	0.019	0.000	0.019
Normalization	0.008	0.000	0.008
PEPSNMR-package	291.009	1.623	293.120
PreprocessingChain	300.827	0.584	301.636
ReadFids	0.559	0.044	0.602
RegionRemoval	0.013	0.000	0.013
SolventSuppression	0.138	0.004	0.141
Warping	13.035	0.112	13.151
WindowSelection	0.041	0.000	0.041
ZeroFilling	0.123	0.000	0.122
ZeroOrderPhaseCorrection	0.096	0.000	0.096
ZoneAggregation	0.374	0.012	1.250